2004 YAMAHA YZF-R1S wiring

CHECKING THE WATER PUMP 6-14. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
ASSEMBLING THE WATER PUMP 6-15. . . . . . . . . . . . . . . . . . . . . . . . . .
CHAPTER 7
FUEL INJECTION SYSTEM
FUEL INJECTION SYSTEM7-1 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
WIRING DIAGRAM 7-2. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
ECU’S SELF-DIAGNOSTIC FUNCTION 7-4. . . . . . . . . . . . . . . . . . . . . .
SUBSTITUTE CHARACTERISTICS OPERATION CONTROL
(FAIL-SAFE ACTION) 7-5. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
FAIL-SAFE ACTIONS TABLE 7-5. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
TROUBLESHOOTING CHART 7-7. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
DIAGNOSTIC MODE 7-8. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
TROUBLESHOOTING DETAILS 7-15. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
THROTTLE BODIES7-35 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
INJECTORS 7-37. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
CHECKING THE INJECTORS 7-39. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
CHECKING THE THROTTLE BODIES 7-39. . . . . . . . . . . . . . . . . . . . . . .
CHECKING THE THROTTLE BODY JOINTS 7-39. . . . . . . . . . . . . . . . . .
CHECKING THE PRESSURE REGULATOR 7-40. . . . . . . . . . . . . . . . . .
CHECKING THE FUEL PUMP AND PRESSURE REGULATOR
OPERATION 7-40. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
CHECKING AND ADJUSTING THE THROTTLE POSITION
SENSOR 7-41. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
CHECKING AND ADJUSTING THE SUB-THROTTLE POSITION
SENSOR 7-43. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
CHECKING AND ADJUSTING THE THERMO WAX 7-45. . . . . . . . . . . .
AIR INDUCTION SYSTEM7-46 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
AIR INJECTION 7-46. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
AIR CUT-OFF VALVE 7-46. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
AIR INDUCTION SYSTEM DIAGRAMS 7-47. . . . . . . . . . . . . . . . . . . . . . .
CHECKING THE AIR INDUCTION SYSTEM 7-48. . . . . . . . . . . . . . . . . .
CHAPTER 8
ELECTRICAL SYSTEM
ELECTRICAL COMPONENTS8-1 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
CHECKING SWITCH CONTINUITY8-3 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
CHECKING THE SWITCHES8-4 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
CHECKING THE BULBS AND BULB SOCKETS8-5 . . . . . . . . . . . . . . . . .
TYPES OF BULBS 8-5. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
CHECKING THE CONDITION OF THE BULBS 8-5. . . . . . . . . . . . . . . .
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7-2
FUEL INJECTION SYSTEMFI
7
WIRING DIAGRAM
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7-10
FUEL INJECTION SYSTEMFI
Diagnostic fault code table
Fault
code No.SymptomProbable cause of malfunctionDiagnostic
code
11
No normal signals are received from
the cylinder identification sensor.
Open or short circuit in wiring sub lead.

Open or short circuit in wiring harness.

Defective cylinder identification sensor.

Malfunction in ECU.

Improperly installed sensor.
—
12
No normal signals are received from
the crankshaft position sensor.
Open or short circuit in wiring harness.

Defective crankshaft position sensor.

Malfunction in pickup rotor.

Malfunction in ECU.

Improperly installed sensor.
—
13
Intake air pressure sensor-open or
short circuit detected.
Open or short circuit in wiring sub lead.

Open or short circuit in wiring harness.

Defective intake air pressure sensor.

Malfunction in ECU.
03
14
Faulty intake air pressure sensor hose
system; a hose is detached, causing
constant application of the
atmospheric pressure to the sensor;
or, the hose is clogged.
Intake air pressure sensor hose is detached, clogged,
kinked, or pinched.

Malfunction in ECU.
03
15
Throttle position sensor-open or
short circuit detected.
Open or short circuit in wiring sub lead.

Open or short circuit in wiring harness.

Defective throttle position sensor.

Malfunction in ECU.

Improperly installed throttle position sensor.
01
16A stuck throttle position sensor is
detected.
Stuck throttle position sensor.

Malfunction in ECU.01
17EXUP servo motor potention
circuit-open or short circuit detected.
Open or short circuit in wiring sub lead.

Detective EXUP servo motor (potention circuit).53
18EXUP servo motor is stuck.
Open or short circuit in wiring sub lead.

Stuck EXUP servo motor (mechanism).

Stuck EXUP servo motor (motor).53
19Open circuit in the input line of ECU
No.15 terminal is detected when the
start switch is pressed.
Open circuit in wiring harness (ECU Coupler).

Malfunction in ECU.20
20
When the main switch is turned to ON,
the atmospheric sensor voltage and
intake air pressure sensor voltage
differ greatly.
Atmospheric pressure sensor hose is clogged.

Intake air pressure sensor hose is clogged, kinked, or pinched.

Malfunction of the atmospheric pressure sensor in the
intermediate electrical potential.

Malfunction of the intake air pressure sensor in the
intermediate electrical potential.

Malfunction in ECU.
03
02
21Coolant temperature sensor-open or
short circuit detected.
Open or short circuit in wiring harness.

Defective coolant temperature sensor.

Malfunction in ECU.06
22Intake temperature sensor-open or
short circuit detected.
Open or short circuit in wiring harness.

Defective intake temperature sensor.

Malfunction in ECU.05
23Atmospheric pressure sensor-open or
short circuit detected.
Open or short circuit in wiring sub lead.

Defective atmospheric pressure sensor.

Malfunction in ECU.02
30The motorcycle has overturned.
Overturned.

Malfunction in ECU.08
33
Open circuit is detected in the primary
lead of the ignition coil (#1).
Open or short circuit in wiring harness.

Malfunction in ignition coil.

Malfunction in ECU.

Malfunction in a component of ignition cut-off circuit system.
30
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7-11
FUEL INJECTION SYSTEMFI
Fault
code No.SymptomProbable cause of malfunctionDiagnostic
code
34
Open circuit is detected in the primary
lead of the ignition coil (#2).
Open or short circuit in wiring harness.

Malfunction in ignition coil.

Malfunction in ECU.

Malfunction in a component of ignition cut-off circuit system.
31
35
Open circuit is detected in the primary
lead of the ignition coil (#3).
Open or short circuit in wiring harness.

Malfunction in ignition coil.

Malfunction in ECU.

Malfunction in a component of ignition cut-off circuit system.
32
36
Open circuit is detected in the primary
lead of the ignition coil (#4).
Open or short circuit in wiring harness.

Malfunction in ignition coil.

Malfunction in ECU.

Malfunction in a component of ignition cut-off circuit system.
33
41Lean angle cut-off switch-open or
short circuit detected.
Open or short circuit in wiring harness.

Defective lean angle cut-off switch.

Malfunction in ECU.08
42
No normal signals are received from
the speed sensor; or, an open or
short circuit is detected in the neutral
switch.
Open or short circuit in wiring harness.

Defective speed sensor.

Malfunction in vehicle speed sensor detected unit.

Defective neutral switch.

Malfunction in the engine side of the neutral switch.

Malfunction in ECU.
07
21
43The ECU is unable to monitor the
battery voltage (an open circuit in the
monitor line to the ECU).
Open circuit in wiring harness.

Malfunction in ECU.09
44An error is detected while reading or
writing on EEPROM.
Malfunction in ECU. (The CO adjustment value is not
properly written on or read from the internal memory).60
46Power supply to the FI system is not
normal.
Malfunction in “CHARGING SYSTEM”.—
47Sub-throttle servo motor potention cir-
cuit-open or short circuit detected.
Open or short circuit in wiring harness.

Detective Sub-throttle servo motor (potention circuit).56
48Sub-throttle servo motor is stuck.
Open or short circuit in wiring harness.

Stuck Sub-throttle servo motor (mechanism).

Stuck Sub-throttle servo motor (motor).56
50
Faulty ECU memory. When this
malfunction is detected, the code
number might not appear on the
meter.
Malfunction in ECU. (The program and data are not
properly written on or read from the internal memory.)
—
Er-1
No signal are received from the ECU.
Open or short circuit in wiring harness.

Malfunction in meter.

Malfunction in ECU.

Defective wire connection of the ECU coupler.
—
Er-2No signal are received from the ECU
within the specified duration.
Improper connection in wiring harness.

Malfunction in meter.

Malfunction in ECU.—
Er-3Data from the ECU can not be
received correctly.
Improper connection in wiring harness.

Malfunction in meter.

Malfunction in ECU.—
Er-4Non-registered data has been
received from the meter.
Improper connection in wiring harness.

Malfunction in meter.

Malfunction in ECU.—
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7-15
FUEL INJECTION SYSTEMFI
Cylinder identification sensor
output voltage
When sensor is on
4.8 V or more
When sensor is off
0.8 V or less Tester positive probe
white / black
Tester negative probe
black / blue
1
2
TROUBLESHOOTING DETAILS
This section describes the measures per fault code number displayed on the meter. Carry out check
and maintenance on items or components that could be a cause of malfunction in accordance with the
order.
When the check and maintenance of malfunctioned part is completed, restore the meter display ac-
cording to the “Restore method”.
Fault code No.:
Fault code number displayed on the meter when the engine failed to work normally. (Refer to “Diag-
nostic fault code table”.)
Diagnostic code No.:
Code number to be used when the diagnostic monitoring mode is operated. (Refer to “DIAGNOS-
TIC MODE”.)
Fault code No.11SymptomNo normal signals are received from the cylinder identification sensor.
Used diagnostic code No. – –
OrderInspection operation item and probable
causeOperation item and countermeasureReinstatement
method
1Installed condition of sensorCheck the installed area for looseness or
pinching.Reinstated by
starting the
2Connected condition of connector
Inspect the coupler for any pins that
may have pulled out.
Check the locking condition of the
coupler.If there is a malfunction, repair it and connect it
securely.
Cylinder identification sensor coupler
Main wiring harness ECU coupler
Sub-wire harness couplerengine and
operating it at
idle.
3Open or short circuit in wiring harness
and / or sub lead.Repair or replace if there is an open or short circuit.
Between sensor coupler and ECU coupler
Blue – Blue
White / Black – White / Black
Black / Blue – Black / Blue
4Defective cylinder identification sensor.Replace if defective.
1. Connect the pocket tester (DC 20 V) to the
cylinder identification sensor coupler terminal
as shown.
2. Set the main switch to “ON”.
3. Measure the cylinder identification sensor out-
put voltage.
4. Is the cylinder identification sensor OK?
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7-16
Crankshaft position sensor
resistance
336
504 Ω at 20C (68F)
(between gray and black) Tester positive probe
gray
Tester negative probe
black
1
2
12
FUEL INJECTION SYSTEMFI
Fault code No.12SymptomNo normal signals are received from the crankshaft position sensor.
Used diagnostic code No. – –
OrderInspection operation item and probable
causeOperation item and countermeasureReinstatement
method
1Installed condition of sensorCheck the installed area for looseness or
pinching.Reinstated by
cranking the
2Connected condition of connector
Inspect the coupler for any pins that
may have pulled out.
Check the locking condition of the
coupler.If there is a malfunction, repair it and connect it
securely.
Crankshaft position sensor coupler
Main wiring harness ECU couplerengine.
3Open or short circuit in wiring harness.Repair or replace if there is an open or short
circuit between the main wiring harnesses.
Between sensor coupler and ECU coupler
Gray – Gray
Black / Blue – Black / Blue
4Defective crankshaft position sensor.Replace if defective.
1. Disconnect the crankshaft position sensor cou-
pler from the wire harness.
2. Connect the pocket tester (Ω  100) to the
crankshaft position sensor coupler as shown.
3. Measure the crankshaft position sensor resis-
tance.
4. Is the crankshaft position sensor OK?
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7-17
Intake air pressure sensor output
voltage
3.75
4.25 V Tester positive probe
pink / white
Tester negative probe
black / blue
1
2
FUEL INJECTION SYSTEMFI
Fault code No.13SymptomIntake air pressure sensor – open or short circuit detected.
Used diagnostic code No. 03 (intake air pressure sensor)
OrderInspection operation item and probable
causeOperation item and countermeasureReinstatement
method
1Connected condition of connector
Inspect the coupler for any pins that
may have pulled out.
Check the locking condition of the
coupler.If there is a malfunction, repair it and connect it
securely.
Intake air pressure sensor coupler
Main wiring harness ECU coupler
Sub-wire harness couplerReinstated by
turning the
main switch
ON.
2Open or short circuit in wiring harness
and / or sub lead.Repair or replace if there is an open or short
circuit.
Between sensor coupler and ECU coupler
Black / Blue – Black / Blue
Pink / White – Pink / White
Blue – Blue
3Defective intake air pressure sensorExecute the diagnostic monitoring mode (Code
No.03).
Replace if defective.
1. Connect the pocket tester (DC 20 V) to the
intake air pressure sensor coupler terminal as
shown.
2. Set the main switch to “ON”.
3. Measure the intake air pressure sensor output
voltage.
4. Is the intake air pressure sensor OK?
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7-18
FUEL INJECTION SYSTEMFI
Fault code No.14SymptomIntake air pressure sensor – hose system malfunction (clogged or detached
hose).
Used diagnostic code No. 03 (intake air pressure sensor)
OrderInspection operation item and probable
causeOperation item and countermeasuerReinstatement
method
1Intake air pressure sensor hose detached,
clogged, kinked, or pinched.
Intake air pressure sensor malfunction at
intermediate electrical potential.Repair or replace the sensor hose.
Inspect and repair the connection.Reinstated by
starting the
engine and
operating it at
2Connected condition of connector
Intake air pressure sensor coupler
Main wiring harness ECU couplerCheck the coupler for any pins that may have
pulled out.
Check the looking condition of the coupler.
If there is a malfunction, repair it and connect it
securely.idle.
3Defective intake air pressure sensor.Execute the diagnostic mode (Code No.03).
Replace if defective.
Refer to “Fault code No. 13”.
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