2004 YAMAHA YZF-R1S ignition

7-10
FUEL INJECTION SYSTEMFI
Diagnostic fault code table
Fault
code No.SymptomProbable cause of malfunctionDiagnostic
code
11
No normal signals are received from
the cylinder identification sensor.
Open or short circuit in wiring sub lead.

Open or short circuit in wiring harness.

Defective cylinder identification sensor.

Malfunction in ECU.

Improperly installed sensor.
—
12
No normal signals are received from
the crankshaft position sensor.
Open or short circuit in wiring harness.

Defective crankshaft position sensor.

Malfunction in pickup rotor.

Malfunction in ECU.

Improperly installed sensor.
—
13
Intake air pressure sensor-open or
short circuit detected.
Open or short circuit in wiring sub lead.

Open or short circuit in wiring harness.

Defective intake air pressure sensor.

Malfunction in ECU.
03
14
Faulty intake air pressure sensor hose
system; a hose is detached, causing
constant application of the
atmospheric pressure to the sensor;
or, the hose is clogged.
Intake air pressure sensor hose is detached, clogged,
kinked, or pinched.

Malfunction in ECU.
03
15
Throttle position sensor-open or
short circuit detected.
Open or short circuit in wiring sub lead.

Open or short circuit in wiring harness.

Defective throttle position sensor.

Malfunction in ECU.

Improperly installed throttle position sensor.
01
16A stuck throttle position sensor is
detected.
Stuck throttle position sensor.

Malfunction in ECU.01
17EXUP servo motor potention
circuit-open or short circuit detected.
Open or short circuit in wiring sub lead.

Detective EXUP servo motor (potention circuit).53
18EXUP servo motor is stuck.
Open or short circuit in wiring sub lead.

Stuck EXUP servo motor (mechanism).

Stuck EXUP servo motor (motor).53
19Open circuit in the input line of ECU
No.15 terminal is detected when the
start switch is pressed.
Open circuit in wiring harness (ECU Coupler).

Malfunction in ECU.20
20
When the main switch is turned to ON,
the atmospheric sensor voltage and
intake air pressure sensor voltage
differ greatly.
Atmospheric pressure sensor hose is clogged.

Intake air pressure sensor hose is clogged, kinked, or pinched.

Malfunction of the atmospheric pressure sensor in the
intermediate electrical potential.

Malfunction of the intake air pressure sensor in the
intermediate electrical potential.

Malfunction in ECU.
03
02
21Coolant temperature sensor-open or
short circuit detected.
Open or short circuit in wiring harness.

Defective coolant temperature sensor.

Malfunction in ECU.06
22Intake temperature sensor-open or
short circuit detected.
Open or short circuit in wiring harness.

Defective intake temperature sensor.

Malfunction in ECU.05
23Atmospheric pressure sensor-open or
short circuit detected.
Open or short circuit in wiring sub lead.

Defective atmospheric pressure sensor.

Malfunction in ECU.02
30The motorcycle has overturned.
Overturned.

Malfunction in ECU.08
33
Open circuit is detected in the primary
lead of the ignition coil (#1).
Open or short circuit in wiring harness.

Malfunction in ignition coil.

Malfunction in ECU.

Malfunction in a component of ignition cut-off circuit system.
30
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7-11
FUEL INJECTION SYSTEMFI
Fault
code No.SymptomProbable cause of malfunctionDiagnostic
code
34
Open circuit is detected in the primary
lead of the ignition coil (#2).
Open or short circuit in wiring harness.

Malfunction in ignition coil.

Malfunction in ECU.

Malfunction in a component of ignition cut-off circuit system.
31
35
Open circuit is detected in the primary
lead of the ignition coil (#3).
Open or short circuit in wiring harness.

Malfunction in ignition coil.

Malfunction in ECU.

Malfunction in a component of ignition cut-off circuit system.
32
36
Open circuit is detected in the primary
lead of the ignition coil (#4).
Open or short circuit in wiring harness.

Malfunction in ignition coil.

Malfunction in ECU.

Malfunction in a component of ignition cut-off circuit system.
33
41Lean angle cut-off switch-open or
short circuit detected.
Open or short circuit in wiring harness.

Defective lean angle cut-off switch.

Malfunction in ECU.08
42
No normal signals are received from
the speed sensor; or, an open or
short circuit is detected in the neutral
switch.
Open or short circuit in wiring harness.

Defective speed sensor.

Malfunction in vehicle speed sensor detected unit.

Defective neutral switch.

Malfunction in the engine side of the neutral switch.

Malfunction in ECU.
07
21
43The ECU is unable to monitor the
battery voltage (an open circuit in the
monitor line to the ECU).
Open circuit in wiring harness.

Malfunction in ECU.09
44An error is detected while reading or
writing on EEPROM.
Malfunction in ECU. (The CO adjustment value is not
properly written on or read from the internal memory).60
46Power supply to the FI system is not
normal.
Malfunction in “CHARGING SYSTEM”.—
47Sub-throttle servo motor potention cir-
cuit-open or short circuit detected.
Open or short circuit in wiring harness.

Detective Sub-throttle servo motor (potention circuit).56
48Sub-throttle servo motor is stuck.
Open or short circuit in wiring harness.

Stuck Sub-throttle servo motor (mechanism).

Stuck Sub-throttle servo motor (motor).56
50
Faulty ECU memory. When this
malfunction is detected, the code
number might not appear on the
meter.
Malfunction in ECU. (The program and data are not
properly written on or read from the internal memory.)
—
Er-1
No signal are received from the ECU.
Open or short circuit in wiring harness.

Malfunction in meter.

Malfunction in ECU.

Defective wire connection of the ECU coupler.
—
Er-2No signal are received from the ECU
within the specified duration.
Improper connection in wiring harness.

Malfunction in meter.

Malfunction in ECU.—
Er-3Data from the ECU can not be
received correctly.
Improper connection in wiring harness.

Malfunction in meter.

Malfunction in ECU.—
Er-4Non-registered data has been
received from the meter.
Improper connection in wiring harness.

Malfunction in meter.

Malfunction in ECU.—
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7-12
FUEL INJECTION SYSTEMFI
NOTE: Diagnostic mode table
Switch the meter display from the regular mode to the diagnosis mode. To switch the display, refer to
“DIAGNOSTIC MODE”.

Check the intake air temperature and coolant temperature as close as possible to the intake air tem-
perature sensor and the coolant temperature sensor respectively.

If it is not possible to check it with an atmospheric pressure gauge, judge it by using 101.3 kPa as the
standard.

If it is not possible to check the intake air temperature, use the ambient temperature as reference.
Diagnostic
codeItemDescription of actionData displayed on meter
(reference value)
01
Throttle angleDisplays the throttle angle.

Check with throttle fully closed.

Check with throttle fully open.0
125 degrees

Fully closed position (15
18)

Fully open position (95
100)
02
Atmospheric
pressureDisplays the atmospheric pressure.
* Use an atmospheric pressure gauge to check the
atmospheric pressure.Compare it to the value
displayed on the meter.
03
Intake air pressureDisplays the intake air pressure.
Engine stop switch is on.
* Generate the pressure difference by cranking the engine
with the starter, without actually starting the engine.
Not cranking-atmospheric
pressure

Cranking-intake air pressure It
changes at the value whitch is
smaller than in the atomo-
spheric pressure.
05Intake temperatureDisplays the intake air temperature.
* Check the temperature in the air cleaner case.Compare it to the value
displayed on the meter.
06Coolant temperatureDisplays the coolant temperature.
* Check the temperature of the coolant.Compare it to the value
displayed on the meter.
07
Vehicle speed pulseDisplays the accumulation of the vehicle pulses that are
generated when the tire is spun.(0
999; resets to 0 after 999)
OK if the numbers appear on
the meter.
08Lean angle cut-off
switchDisplays the lean angle cut-off switch values.Upright: 0.4
1.4 V
Overturned: 3.7
4.4 V
09Fuel system voltage
(battery voltage)Displays the fuel system voltage (battery voltage).
Engine stop switch is on.0
18.7 V
Normally, approximately 12.0 V
20Sidestand switchDisplays that the switch is ON or OFF. (When the gear is in a
position other than neutral.)Stand retracted: ON
Stand extended: OFF
21Neutral switchDisplays that the switch is ON or OFF.Neutral: ON
In gear: OFF
30
Ignition coil #1After the engine stop switch has been turned from OFF to
ON, it actuates ignition coil #1 for five times every second
and illuminates the engine trouble warning light.
* Connect an ignition checker.
* If the engine stop switch is ON, turn it OFF once, and then
turn it back ON.Check that spark is generated,
5 times with the engine stop
switch ON.
31
Ignition coils #2After the engine stop switch has been turned from OFF to
ON, it actuates ignition coil #2 for five times every second
and illuminates the engine trouble warning light.
* Connect an ignition checker.
* If the engine stop switch is ON, turn it OFF once, and then
turn it back ON.Check that spark is generated,
5 times with the engine stop
switch ON.
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7-13
FUEL INJECTION SYSTEMFI
Diagnostic
codeItemDescription of actionData displayed on meter
(reference value)
32
Ignition coil #3After the engine stop switch has been turned from OFF to
ON, it actuates ignition coil #3 for five times every second
and illuminates the engine trouble warning light.
* Connect an ignition checker.
* If the engine stop switch is ON, turn it OFF once, and then
turn it back ON.Check that spark is generated,
5 times with the engine stop
switch ON.
33
Ignition coil #4After the engine stop switch has been turned from OFF to
ON, it actuates ignition coil #4 for five times every second
and illuminates the engine trouble warning light.
* Connect an ignition checker.
* If the engine stop switch is ON, turn it OFF once, and then
turn it back ON.Check that spark is generated,
5 times with the engine stop
switch ON.
36
Injector #1After the engine stop switch has been turned from OFF to
ON, it actuates the injector #1 five times every second and
illuminates the engine trouble warning light.
* If the engine stop switch is ON, turn it OFF once, and then
turn it back ON.Check the operating sound of
the injector five times with
engine stop switch ON.
37
Injector #2After the engine stop switch has been turned from OFF to
ON, it actuates the injector #2 five times every second and
illuminates the engine trouble warning light.
* If the engine stop switch is ON, turn it OFF once, and then
turn it back ON.Check the operating sound of
the injector five times with
engine stop switch ON.
38
Injector #3After the engine stop switch has been turned from OFF to
ON, it actuates the injector #3 five times every second and
illuminates the engine trouble warning light.
* If the engine stop switch is ON, turn it OFF once, and then
turn it back ON.Check the operating sound of
the injector five times with
engine stop switch ON.
39
Injector #4After the engine stop switch has been turned from OFF to
ON, it actuates the injector #4 five times every second and
illuminates the engine trouble warning light.
* If the engine stop switch is ON, turn it OFF once, and then
turn it back ON.Check the operating sound of
the injector five times with
engine stop switch ON.
48
AI system solenoidAfter the engine stop switch has been turned from OFF to
ON, it actuates the AI system solenoid five times every
second and illuminates the engine trouble warning light.
* If the engine stop switch is ON, turn it OFF once, and then
turn it back ON.Check the operating sound of
the AI system solenoid 5 times
with the engine stop
switch ON.
50
Fuel injection system
relayAfter the engine stop switch has been turned from OFF to
ON, it actuates the fuel injection system relay five times
every second and illuminates the engine trouble warning
light (the light is OFF when the relay is ON, and the light is
ON when the relay is OFF).
* If the engine stop switch is ON, turn it OFF once, and then
turn it back ON.Check the fuel injection system
relay operating sound 5 times
with the engine stop
switch ON.
51
Radiator fan motor
relayAfter the engine stop switch has been turned from OFF to
ON, it actuates the radiator fan motor relay five times every
5 seconds and illuminates the engine trouble warning light.
(ON 2 seconds, OFF 3 seconds)
* If the engine stop switch is ON, turn it OFF once, and then
turn it back ON.Check the radiator fan motor
relay operating sound 5 times
with the engine stop
switch ON.
(At that time, the fan motor
rotates.)
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7-27
FUEL INJECTION SYSTEMFIFUEL INJECTION SYSTEMFI
Fault code No.33SymptomMalfunction detected in the primary lead of the ignition coil (#1).
Used diagnostic code No. 30 (ignition coil #1)
OrderInspection operation item and probable
causeOperation item and countermeasureReinstatement
method
1Connected condition of connector
Inspect the coupler for any pins that
may have pulled out.
Check the locking condition of the
coupler.If there is a malfunction, repair it and connect it
securely.
Ignition coil primary side coupler – Orange
Main wiring harness ECU couplerReinstated by
starting the en-
gine and oper-
ating it at idle.
2Open or short circuit in lead.Repair or replace if there is an open or short
circuit.
Between ignition coil coupler (#1) and ECU
coupler / main harness
Orange – Orange
Red / Black – Red / Black
3Detective ignition coil (test the primary
and secondary coils for continuity).Execute the diagnostic mode (Code No.30).
Replace if defective.
Refer to “IGNITION SYSTEM” in chapter 8.
Fault code No.34SymptomMalfunction detected in the primary lead of the ignition coil (#2).
Used diagnostic code No. 31 (ignition coil #2)
OrderInspection operation item and probable
causeOperation item and countermeasureReinstatement
method
1Connected condition of connector
Inspect the coupler for any pins that
may have pulled out.
Check the locking condition of the
coupler.If there is a malfunction, repair it and connect it
securely.
Ignition coil primary side coupler – Gray / Red
Main wiring harness ECU couplerReinstated by
starting the en-
gine and oper-
ating it at idle.
2Open or short circuit in lead wire.Repair or replace if there is an open or short
circuit.
Between ignition coil coupler (#2) and ECU
coupler / main harness
Gray / Red – Gray / Red
Red / Black – Red / Black
3Defective ignition coil (test the primary
and secondary coils for continuity).Execute the diagnostic mode (Code No.31).
Replace if defective.
Refer to “IGNITION SYSTEM” in chapter 8.
Fault code No.35SymptomMalfunction detected in the primary lead of the ignition coil (#3).
Used diagnostic code No. 32 (ignition coil #3)
OrderInspection operation item and probable
causeOperation item and countermeasureReinstatement
method
1Connected condition of connector
Inspect the coupler for any pins that
may have pulled out.
Check the locking condition of the
coupler.If there is a malfunction, repair it and connect it
securely.
Ignition coil primary side coupler – Orange /
Green
Main wiring harness ECU couplerReinstated by
starting the en-
gine and oper-
ating it at idle.
2Open or short circuit in lead wire.Repair or replace if there is an open or short
circuit.
Between ignition coil coupler (#3) and ECU
coupler / main harness
Orange / Green – Orange / Green
Red / Black – Red / Black
3Defective ignition coil (test the primary
and secondary coils for continuity).Execute the diagnostic mode (Code No.32).
Replace if defective.
Refer to “IGNITION SYSTEM” in chapter 8.
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7-28
FUEL INJECTION SYSTEMFI
Fault code No.36SymptomMalfunction detected in the primary lead of the ignition coil (#4).
Used diagnostic code No. 33 (ignition coil #4)
OrderInspection operation item and probable
causeOperation item and countermeasureReinstatement
method
1Connected state of connector
Inspect the coupler for any pins that
may have pulled out.
Check the locking condition of the
coupler.If there is a malfunction, repair it and connect it
securely.
Ignition coil primary side coupler – Gray / Green
Main wiring harness ECU couplerReinstated by
starting the en-
gine and oper-
ating it at idle.
2Open or short circuit in lead wire.Repair or replace if there is an open or short
circuit.
Between ignition coil coupler (#4) and ECU
coupler / main harness
Gray / Green – Gray / Green
Red / Black – Red / Black
3Defective ignition coil (test the primary
and secondary coils for continuity).Execute the diagnostic mode (Code No.33).
Replace if defective.
Refer to “IGNITION SYSTEM” in chapter 8.
Fault code No.41SymptomOpen or short circuit detected in the lean angle cut-off switch.
Used diagnostic code No. 08 (lean angle cut-off switch)
OrderInspection operation item and probable
causeOperation item and countermeasureReinstatement
method
1Connected condition of connector
Inspect the coupler for any pins that
may have pulled out.
Check the locking condition of the
coupler.If there is a malfunction, repair it and connect it
securely.
Lean angle cut-off switch coupler
Main wiring harness ECU couplerReinstated by
turning the
main switch
ON.
2Open or short circuit in wiring harness.Repair or replace if there is an open or short
circuit.
Between switch coupler and ECU coupler
Black / Blue – Black / Blue
Yellow / Green – Yellow / Green
Blue – Blue
3Defective lean angle cut-off switchExecute the diagnostic mode (Code No.08).
Replace if defective.
Refer to Fault code No. 30.
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7-31
FUEL INJECTION SYSTEMFI
Fault code No.44SymptomError is detected while reading or writing on EEP-ROM
(CO adjustment value).
Used diagnostic No. 60 (EEP-ROM improper cylinder indication)
OrderInspection operation item and probable
causeOperation item and countermeasureReinstatement
method
1Malfunction in ECUExecute diagnostic code 60
1. Check the faulty cylinder. (If there are multiple
cylinders, the number of the faulty cylinders
appear alternately at 2-second intervals.)
2. Readjust the CO of the displayed cylinder.
Refer to “ADJUSTING THE EXHAUST GAS
VALUME” in chapter 3.
Replace ECU if defective.Reinstated by
turning the
main switch
ON.
Fault code No.46SymptomPower supply to the FI system relay is not normal.
Used diagnostic code No. – –
OrderInspection operation item and probable
causeOperation item and countermeasureReinstatement
method
1Connected condition of connector
Inspect the coupler for any pins that
may have pulled out.
Check the locking condition of the
coupler.If there is a malfunction, repair it and connect it
securely.
ECU coupler.Reinstated by
starting the
engine and
operating it at
idle.
2Faulty batteryReplace or change the battery
Refer to “CHECKING AND CHARGING THE
BATTERY” in chapter 3.
3The malfunction of the rectifier / regula-
tor.Replace if defective.
Refer to “CHARGING SYSTEM” in chapter 8.
4Open or short circuit in wiring harness.Repair or replace if there is an open or short
circuit.

Between battery and main switch
red – red

Between main switch and fuse (ignition)
brown/blue – brown/blue

Between fuse (ignition) and ECU
red/white – red/white
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8-1
8
ELECTRICAL COMPONENTSELEC
9Oil level switch
10Radiator fan motor
11Horn
12Ignition coil
1Main switch
2Front brake light switch
3Starter relay
4Battery
5Fuse box
6Rear brake light switch
7Neutral switch
8Sidestand switch
EAS00729
ELECTRICAL SYSTEM
ELECTRICAL COMPONENTS
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