2004 YAMAHA YZF-R1S charging

3-67
CHECKING AND CHARGING THE BATTERY /
CHECKING THE FUSESCHK
ADJ
CAUTION:
CAUTION:
NOTE: 6. Install:

battery
7. Connect:

battery leads
(to the battery terminals)
First, connect the positive battery lead
1,
and then the negative battery lead
2.
8. Check:

battery terminals
Dirt
Clean with a wire brush.
Loose connection
Connect properly.
9. Lubricate:

battery terminals
Recommended lubricant
Dielectric grease
10. Install:

rider seat
Refer to “SEATS”.
EAS00181
CHECKING THE FUSES
The following procedure applies to all of the
fuses.
To avoid a short circuit, always set the main
switch to “OFF” when checking or replacing
a fuse.
1. Remove:

front cowling inner panel (left)
Refer to “COWLINGS”.

rider seat
Refer to “SEATS”.
2. Check:

fuse
a. Connect the pocket tester to the fuse and
check the continuity.
Set the pocket tester selector to “Ω  1”.
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7-11
FUEL INJECTION SYSTEMFI
Fault
code No.SymptomProbable cause of malfunctionDiagnostic
code
34
Open circuit is detected in the primary
lead of the ignition coil (#2).
Open or short circuit in wiring harness.

Malfunction in ignition coil.

Malfunction in ECU.

Malfunction in a component of ignition cut-off circuit system.
31
35
Open circuit is detected in the primary
lead of the ignition coil (#3).
Open or short circuit in wiring harness.

Malfunction in ignition coil.

Malfunction in ECU.

Malfunction in a component of ignition cut-off circuit system.
32
36
Open circuit is detected in the primary
lead of the ignition coil (#4).
Open or short circuit in wiring harness.

Malfunction in ignition coil.

Malfunction in ECU.

Malfunction in a component of ignition cut-off circuit system.
33
41Lean angle cut-off switch-open or
short circuit detected.
Open or short circuit in wiring harness.

Defective lean angle cut-off switch.

Malfunction in ECU.08
42
No normal signals are received from
the speed sensor; or, an open or
short circuit is detected in the neutral
switch.
Open or short circuit in wiring harness.

Defective speed sensor.

Malfunction in vehicle speed sensor detected unit.

Defective neutral switch.

Malfunction in the engine side of the neutral switch.

Malfunction in ECU.
07
21
43The ECU is unable to monitor the
battery voltage (an open circuit in the
monitor line to the ECU).
Open circuit in wiring harness.

Malfunction in ECU.09
44An error is detected while reading or
writing on EEPROM.
Malfunction in ECU. (The CO adjustment value is not
properly written on or read from the internal memory).60
46Power supply to the FI system is not
normal.
Malfunction in “CHARGING SYSTEM”.—
47Sub-throttle servo motor potention cir-
cuit-open or short circuit detected.
Open or short circuit in wiring harness.

Detective Sub-throttle servo motor (potention circuit).56
48Sub-throttle servo motor is stuck.
Open or short circuit in wiring harness.

Stuck Sub-throttle servo motor (mechanism).

Stuck Sub-throttle servo motor (motor).56
50
Faulty ECU memory. When this
malfunction is detected, the code
number might not appear on the
meter.
Malfunction in ECU. (The program and data are not
properly written on or read from the internal memory.)
—
Er-1
No signal are received from the ECU.
Open or short circuit in wiring harness.

Malfunction in meter.

Malfunction in ECU.

Defective wire connection of the ECU coupler.
—
Er-2No signal are received from the ECU
within the specified duration.
Improper connection in wiring harness.

Malfunction in meter.

Malfunction in ECU.—
Er-3Data from the ECU can not be
received correctly.
Improper connection in wiring harness.

Malfunction in meter.

Malfunction in ECU.—
Er-4Non-registered data has been
received from the meter.
Improper connection in wiring harness.

Malfunction in meter.

Malfunction in ECU.—
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7-31
FUEL INJECTION SYSTEMFI
Fault code No.44SymptomError is detected while reading or writing on EEP-ROM
(CO adjustment value).
Used diagnostic No. 60 (EEP-ROM improper cylinder indication)
OrderInspection operation item and probable
causeOperation item and countermeasureReinstatement
method
1Malfunction in ECUExecute diagnostic code 60
1. Check the faulty cylinder. (If there are multiple
cylinders, the number of the faulty cylinders
appear alternately at 2-second intervals.)
2. Readjust the CO of the displayed cylinder.
Refer to “ADJUSTING THE EXHAUST GAS
VALUME” in chapter 3.
Replace ECU if defective.Reinstated by
turning the
main switch
ON.
Fault code No.46SymptomPower supply to the FI system relay is not normal.
Used diagnostic code No. – –
OrderInspection operation item and probable
causeOperation item and countermeasureReinstatement
method
1Connected condition of connector
Inspect the coupler for any pins that
may have pulled out.
Check the locking condition of the
coupler.If there is a malfunction, repair it and connect it
securely.
ECU coupler.Reinstated by
starting the
engine and
operating it at
idle.
2Faulty batteryReplace or change the battery
Refer to “CHECKING AND CHARGING THE
BATTERY” in chapter 3.
3The malfunction of the rectifier / regula-
tor.Replace if defective.
Refer to “CHARGING SYSTEM” in chapter 8.
4Open or short circuit in wiring harness.Repair or replace if there is an open or short
circuit.

Between battery and main switch
red – red

Between main switch and fuse (ignition)
brown/blue – brown/blue

Between fuse (ignition) and ECU
red/white – red/white
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8-10
YESNO 2. Battery

Check the condition of the battery.
Refer to “CHECKING AND CHARGING
THE BATTERY” in chapter 3.
Minimum open-circuit voltage
12.8 V or more at 20C (68F)

Is the battery OK?

Clean the battery
terminals.

Recharge or re-
place the battery.
EAS00739
YESNO
EAS00741
3. Spark plugs
The following procedure applies to all of the
spark plugs.

Check the condition of the spark plug.

Check the spark plug type.

Measure the spark plug gap.
Refer to “CHECKING THE SPARK PLUGS”
in chapter 3.
Standard spark plug
CR9EK (NGK)
Spark plug gap
0.6  0.7 mm (0.0236  0.0276 in)

Is the spark plug in good condition, is it of the
correct type, and is its gap within specifica-
tion?
Re-gap or replace
the spark plug.
IGNITION SYSTEMELEC
NOTE:
YESNO
1. Main and ignition fuses

Check the main and ignition fuses for conti-
nuity.
Refer to “CHECKING THE FUSES” in chap-
ter 3.

Are the main and ignition fuses OK?
Replace the fuse(s).
EAS00737
TROUBLESHOOTING
The ignition system fails to operate (no
spark or intermittent spark).
Check:
1. main and ignition fuses
2. battery
3. spark plugs
4. ignition spark gap
5. ignition coil resistance
6. crankshaft position sensor
7. main switch
8. engine stop switch
9. neutral switch
10. sidestand switch
11. clutch switch
12. starting circuit cut-off relay (diode)
13. lean angle cut-off switch
14. wiring connections
(of the entire ignition system)

Before troubleshooting, remove the following
part(s):
1. seat
2. fuel tank
3. side cowlings

Troubleshoot with the following special tool(s).
Ignition checker
90890-06754
Dynamic spark tester
YM-34487
Pocket tester
90890-03112, YU-3112
EAS00738
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8-16
YESNO
3. Starter motor

Connect the positive battery terminal and
starter motor lead with a jumper lead .
Repair or replace the
starter motor.
A wire that is used as a jumper lead
must have at least the same capacity or
more as that of the battery lead, other-
wise the jumper lead may burn.

This check is likely to produce sparks,
therefore make sure nothing flammable
is in the vicinity.

Does the starter motor turn?
WARNING
1
23
EAS00758
YESNO 2. Battery

Check the condition of the battery.
Refer to “CHECKING AND CHARGING
THE BATTERY” in chapter 3.
Minimum open-circuit voltage
12.8 V or more at 20C (68F)

Is the battery OK?

Clean the battery
terminals.

Recharge or re-
place the battery.
EAS00739
ELECTRIC STARTING SYSTEMELEC
NOTE:
YESNO
1. Main and ignition fuses

Check the main and ignition fuses for conti-
nuity.
Refer to “CHECKING THE FUSES” in chap-
ter 3.

Are the main and ignition fuses OK?
Replace the fuse(s).
EAS00757
TROUBLESHOOTING
The starter motor fails to turn.
Check:
1. main and ignition fuses
2. battery
3. starter motor
4. starting circuit cut-off relay
5. starter relay
6. main switch
7. engine stop switch
8. neutral switch
9. sidestand switch
10. clutch switch
11. start switch
12. wiring connections
(of the entire starting system)

Before troubleshooting, remove the following
part(s):
1. seat
2. fuel tank
3. side cowlings
4. throttle body assembly

Troubleshoot with the following special tool(s).
Pocket tester
90890-03112, YU-3112
EAS00738
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8-24
2A.C. magneto
3Rectifier / regulator
4Fuse (main)
6Battery
CHARGING SYSTEMELEC
EAS00773
CHARGING SYSTEM
CIRCUIT DIAGRAM
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8-25
NOYES
3. Charging voltage

Set the engine tachometer to the ignition coil
of cylinder #1.

Connect the pocket tester (DC 20 V) to the
battery as shown.
The charging circuit
is OK. Positive tester probe

positive battery terminal
Negative tester probe

negative battery terminal

Start the engine and let it run at approxi-
mately 5,000 r / min.

Measure the charging voltage.
Charging voltage
14 V at 5,000 r / min

Is the charging voltage within specification?
EAS00775
YESNO

Clean the battery
terminals.

Recharge or re-
place the battery.
Make sure the battery is fully charged.
NOTE:
Minimum open-circuit voltage
12.8 V or more at 20C (68F)

Is the battery OK?
CHARGING SYSTEMELEC
NOTE:
YESNO
1. Main fuse

Check the main fuse for continuity.
Refer to “CHECKING THE FUSES” in chap-
ter 3.

Is the main fuse OK?
Replace the fuse.
2. Battery

Check the condition of the battery.
Refer to “CHECKING AND CHARGING
THE BATTERY” in chapter 3.
EAS00739 EAS00774
TROUBLESHOOTING
The battery is not being charged.
Check:
1. main fuse
2. battery
3. charging voltage
4. stator coil lead
5. stator coil resistance
6. wiring connections
(of the entire charging system)

Before troubleshooting, remove the following
part(s):
1. seat
2. fuel tank

Troubleshoot with the following special tool(s).
Pocket tester
90890-03112, YU-3112
EAS00738
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8-26
CHARGING SYSTEMELEC
YESNO 5. Stator coil resistance

Remove the generator cover.

Connect the pocket tester (Ω
1) to the sta-
tor coils as shown.
Replace the stator
coil assembly.
EAS00776
Positive tester probe
white
Negative tester probe
white
Positive tester probe
white
Negative tester probe
white1
1
2
3

Measure the stator coil resistances.
Stator coil resistance
0.14  0.18 Ω at 20C (68F)

Is the stator coil OK?
YESNO 6. Wiring

Check the wiring connections of the entire
charging system.
Refer to “CIRCUIT DIAGRAM”.

Is the charging system’s wiring properly con-
nected and without defects?
Properly connect or
repair the charging
system’s wiring.
EAS00779
Replace the rectifi-
er / regulator.
4. Stator coil lead

Disconnect stator coil lead coupler.

Connect the pocket tester (Ω
1) to the sta-
tor coil lead coupler as shown.
Positive tester probe

white
Negative tester probe

ground
3
Positive tester probe

white
Negative tester probe

ground
1
Positive tester probe

white
Negative tester probe

groundNo
continuity
2
YESNO
Replace the stator
coil lead.
Are the tester readings correct?
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