2006 YAMAHA YZF-R1 check engine light

TABLE OF CONTENTSSAFETY INFORMATION ..................1-1
DESCRIPTION ..................................2-1
Left view ..........................................2-1
Right view ........................................2-2
Controls and instruments.................2-3
INSTRUMENT AND CONTROL
FUNCTIONS.......................................3-1
Immobilizer system .........................3-1
Main switch/steering lock ................3-2
Indicator and warning lights ............3-3
Multi-function meter unit .................3-8
Anti-theft alarm (optional) .............3-13
Handlebar switches ......................3-14
Clutch lever ...................................3-15
Shift pedal .....................................3-15
Brake lever ...................................3-16
Brake pedal ..................................3-16
Fuel tank cap ................................3-17
Fuel ...............................................3-17
Fuel tank breather/overflow
hose ..........................................3-18
Catalytic converter ........................3-19
Seats ............................................3-19
Helmet holders .............................3-20
Adjusting the front fork ..................3-21
Adjusting the shock absorber
assembly ...................................3-23
Adjusting the seat height ..............3-26
Luggage strap holders ..................3-27EXUP system ............................... 3-27
Sidestand ..................................... 3-27
Ignition circuit cut-off system ........ 3-28
PRE-OPERATION CHECKS............. 4-1
Pre-operation check list .................. 4-2
OPERATION AND IMPORTANT
RIDING POINTS................................. 5-1
Starting the engine ......................... 5-1
Shifting ........................................... 5-2
Tips for reducing fuel
consumption ............................... 5-3
Engine break-in .............................. 5-3
Parking ........................................... 5-4
PERIODIC MAINTENANCE AND
MINOR REPAIR................................. 6-1
Owner’s tool kit ............................... 6-1
Periodic maintenance and
lubrication chart .......................... 6-2
Removing and installing panels ..... 6-6
Checking the spark plugs ............... 6-7
Engine oil and oil filter cartridge ..... 6-8
Coolant ......................................... 6-12
Replacing the air filter element ..... 6-14
Adjusting the engine idling
speed ........................................ 6-16
Checking the throttle cable
free play .................................... 6-16
Valve clearance ............................ 6-17Tires ............................................. 6-17
Forged wheels ............................. 6-20
Adjusting the clutch lever
free play .................................... 6-20
Adjusting the rear brake light
switch ....................................... 6-21
Checking the front and rear
brake pads ................................ 6-21
Checking the brake fluid level ...... 6-22
Changing the brake fluid .............. 6-23
Drive chain slack .......................... 6-23
Cleaning and lubricating the
drive chain ................................ 6-24
Checking and lubricating the
cables ....................................... 6-25
Checking and lubricating the
throttle grip and cable ............... 6-25
Checking and lubricating the
brake and clutch levers ............ 6-26
Checking and lubricating the
sidestand .................................. 6-26
Lubricating the swingarm
pivots ........................................ 6-27
Checking the front fork ................. 6-27
Checking the steering .................. 6-28
Checking the wheel bearings ....... 6-28
Battery ......................................... 6-29
Replacing the fuses ..................... 6-30
Replacing a headlight bulb .......... 6-32
Tail/brake light ............................. 6-35U4B1E0E0.book Page 1 Wednesday, October 12, 2005 2:32 PM

INSTRUMENT AND CONTROL FUNCTIONS
3-4
3
EAU11060
Neutral indicator light “”
This indicator light comes on when the
transmission is in the neutral position.
EAU11080
High beam indicator light “”
This indicator light comes on when the
high beam of the headlight is switched
on.
EAU11250
Oil level warning light “”
This warning light comes on when the
engine oil level is low.
The electrical circuit of the warning light
can be checked by turning the key to
“ON”.
If the warning light does not come on
for a few seconds, then go off, have a
Yamaha dealer check the electrical cir-
cuit.NOTE:

Even if the oil level is sufficient, the
warning light may flicker when
riding on a slope or during sudden
acceleration or deceleration, but
this is not a malfunction.


This model is also equipped with a
self-diagnosis device for the oil
level detection circuit. If the oil lev-
el detection circuit is defective, the
following cycle will be repeated un-
til the malfunction is corrected: The
oil level warning light will flash ten
times, then go off for 2.5 seconds.
If this occurs, have a Yamahadealer check the vehicle.
EAU11361
Fuel level warning light “”
This warning light comes on when the
fuel level drops below approximately
3.4 L (0.90 US gal) (0.75 Imp.gal).
When this occurs, refuel as soon as
possible.
The electrical circuit of the warning light
can be checked by turning the key to
“ON”.
If the warning light does not come on
for a few seconds, and then go off,
have a Yamaha dealer check the elec-
trical circuit.
NOTE:This model is also equipped with a self-
diagnosis device for the fuel level de-
tection circuit. If the fuel level detection
circuit is defective, the following cycle
will be repeated until the malfunction is
corrected: The fuel level warning light
will flash eight times, and then go off for
3.0 seconds. If this occurs, have aYamaha dealer check the vehicle.
EAU11422
Coolant temperature warning light
“”
This warning light comes on when the
engine overheats. When this occurs,
stop the engine immediately and allow
the engine to cool.
The electrical circuit of the warning light
can be checked by turning the key to
“ON”.
If the warning light does not come on
for a few seconds, then go off, have a
Yamaha dealer check the electrical cir-
cuit.
U4B1E0E0.book Page 4 Wednesday, October 12, 2005 2:32 PM

INSTRUMENT AND CONTROL FUNCTIONS
3-7
3
EAU11530
Engine trouble warning light “”
This warning light comes on or flashes
when an electrical circuit monitoring the
engine is defective. When this occurs,
have a Yamaha dealer check the self-
diagnosis system. (See page 3-8 for an
explanation of the self-diagnosis de-
vice.)
The electrical circuit of the warning light
can be checked by turning the key to
“ON”. If the warning light does not come
on for a few seconds, then go off, have
a Yamaha dealer check the electrical
circuit.
EAU11571
Shift timing indicator light
This indicator light can be set to come
on and go off at the desired engine
speeds and is used to inform the rider
when it is time to shift to the next higher
gear.
The electrical circuit of the indicator
light can be checked by turning the key
to “ON”.
If the indicator light does not come on
for a few seconds, then go off, have a
Yamaha dealer check the electrical cir-cuit. (See page 3-8 for a detailed expla-
nation of the function of this indicator
light and on how to set it.)
EAU38610
Immobilizer system indicator light
The electrical circuit of the indicator
light can be checked by turning the key
to “ON”.
If the indicator light does not come on
for a few seconds, then go off, have a
Yamaha dealer check the electrical cir-
cuit.
When the key is turned to “OFF” and 30
seconds have passed, the indicator
light will start flashing indicating the im-
mobilizer system is enabled. After 24
hours have passed, the indicator light
will stop flashing, however the immobi-
lizer system is still enabled.NOTE:This model is also equipped with a self-
diagnosis device for the immobilizer
system. If the immobilizer system is de-
fective, the indicator light will start flash-
ing a pattern and the
odometer/tripmeter will display a 2-digit
code when the key is turned to “ON”.
When this occurs, have a Yamahadealer check the self-diagnosis system.
However, if the indicator light slowly
flashes five times, and then quickly
flashes two times repeatedly, error
code 52 will be displayed. This error
could be caused by signal interference.
If this occurs, try the following.
1. Use the code re-registering key to
start the engine.NOTE:Make sure there are no other immobi-
lizer keys close to the main switch, and
do not keep more than one immobilizer
key on the same key ring! Immobilizer
system keys may cause signal interfer-
ence, which may prevent the enginefrom starting.
2. If the engine starts, turn it off, and
try starting the engine with the
standard keys.
3. If one or both of the standard keys
do not start the engine, take the
vehicle, the code re-registering
key and both standard keys to a
Yamaha dealer and have the stan-
dard keys re-registered.
U4B1E0E0.book Page 7 Wednesday, October 12, 2005 2:32 PM

INSTRUMENT AND CONTROL FUNCTIONS
3-11
3


When the air intake temperature
display is selected, “A” is displayedbefore the temperature.
Self-diagnosis devices
This model is equipped with a self-diag-
nosis device for various electrical cir-
cuits.
If any of those circuits are defective, the
engine trouble warning light will come
on, and then the right display will indi-
cate a two-digit error code (e.g., 11, 12,
13).
This model is also equipped with a self-
diagnosis device for the immobilizer
system.
If any of the immobilizer system circuits
are defective, the immobilizer system
indicator light will flash, and then the
right display will indicate a two-digit er-
ror code (e.g., 51, 52, 53).
NOTE:If the right display indicates error code
52, this could be caused by transpon-
der interference. If this error code ap-pears, try the following.1. Use the code re-registering key to
start the engine.
NOTE:Make sure there are no other immobi-
lizer keys close to the main switch, and
do not keep more than one immobilizer
key on the same key ring! Immobilizer
system keys may cause signal interfer-
ence, which may prevent the enginefrom starting.
2. If the engine starts, turn it off and
try starting the engine with the
standard keys.
3. If one or both of the standard keys
do not start the engine, take the
vehicle, the code re-registering
key and both standard keys to a
Yamaha dealer and have the stan-
dard keys re-registered.
If the right display indicates any error
codes, note the code number, and then
have a Yamaha dealer check the vehi-
cle.
CAUTION:
ECA11590
If the display indicates an error
code, the vehicle should be checked
as soon as possible in order to avoidengine damage.
Display brightness and shift timing
indicator light control mode
This mode cycles through five control
functions, allowing you to make the fol-
lowing settings in the order listed be-
low.1. Display brightness
2. Shift timing indicator light activation/deacti-
vation
3. Shift timing indicator light
U4B1E0E0.book Page 11 Wednesday, October 12, 2005 2:32 PM

INSTRUMENT AND CONTROL FUNCTIONS
3-18
3
CAUTION:
ECA10070
Immediately wipe off spilled fuel
with a clean, dry, soft cloth, since
fuel may deteriorate painted surfac-es or plastic parts.
EAU13390
CAUTION:
ECA11400
Use only unleaded gasoline. The use
of leaded gasoline will cause severe
damage to internal engine parts,
such as the valves and piston rings,as well as to the exhaust system.
Your Yamaha engine has been de-
signed to use premium unleaded gaso-
line with a research octane number of
95 or higher. If knocking (or pinging) oc-curs, use a gasoline of a different
brand. Use of unleaded fuel will extend
spark plug life and reduce maintenance
costs.
EAU34072
Fuel tank breather/overflow
hose Before operating the motorcycle:

Check the fuel tank breather/over-
flow hose connection.


Check the fuel tank breather/over-
flow hose for cracks or damage,
and replace it if damaged.


Make sure that the end of the fuel
tank breather/overflow hose is not
blocked, and clean it if necessary.


Make sure that the end of the fuel
tank breather/overflow hose is po-
sitioned outside of the cowling.
Recommended fuel:
PREMIUM UNLEADED GASOLINE
ONLY
Fuel tank capacity:
18.0 L (4.76 US gal) (3.96 Imp.gal)
Fuel reserve amount (when the fuel
level warning light comes on):
3.4 L (0.90 US gal) (0.75 Imp.gal)
1. Fuel tank breather/overflow hose
U4B1E0E0.book Page 18 Wednesday, October 12, 2005 2:32 PM

OPERATION AND IMPORTANT RIDING POINTS
5-1
5
EAU15950
WARNING
EWA10270


Become thoroughly familiar
with all operating controls and
their functions before riding.
Consult a Yamaha dealer re-
garding any control or function
that you do not thoroughly un-
derstand.


Never start the engine or oper-
ate it in a closed area for any
length of time. Exhaust fumes
are poisonous, and inhaling
them can cause loss of con-
sciousness and death within a
short time. Always make sure
that there is adequate ventila-
tion.


Before starting out, make sure
that the sidestand is up. If the
sidestand is not raised com-
pletely, it could contact the
ground and distract the opera-
tor, resulting in a possible lossof control.
EAU33010
Starting the engine In order for the ignition circuit cut-off
system to enable starting, one of the
following conditions must be met:

The transmission is in the neutral
position.


The transmission is in gear with
the clutch lever pulled and the sid-
estand up.WARNING
EWA10290


Before starting the engine,
check the function of the igni-
tion circuit cut-off system ac-
cording to the procedure
described on page 3-28.


Never ride with the sidestanddown.
1. Turn the key to “ON” and make
sure that the engine stop switch is
set to “”.
CAUTION:
ECA11730
The following warning lights and in-
dicator light should come on for a
few seconds, then go off.

Oil level warning light


Fuel level warning light


Coolant temperature warning
light


Shift timing indicator light


Engine trouble warning light


Immobilizer system indicator
light
If a warning or indicator light does
not go off, see page 3-3 for the corre-
sponding warning and indicator
light circuit check.
2. Shift the transmission into the neu-
tral position.NOTE:When the transmission is in the neutral
position, the neutral indicator light
should be on, otherwise have a
Yamaha dealer check the electrical cir-cuit.
3. Start the engine by pushing the
start switch.NOTE:If the engine fails to start, release the
start switch, wait a few seconds, and
then try again. Each starting attempt
should be as short as possible to pre-
U4B1E0E0.book Page 1 Wednesday, October 12, 2005 2:32 PM

OPERATION AND IMPORTANT RIDING POINTS
5-3
5
EAU16810
Tips for reducing fuel
consumption Fuel consumption depends largely on
your riding style. Consider the following
tips to reduce fuel consumption:

Shift up swiftly, and avoid high en-
gine speeds during acceleration.


Do not rev the engine while shifting
down, and avoid high engine
speeds with no load on the engine.


Turn the engine off instead of let-
ting it idle for an extended length of
time (e.g., in traffic jams, at traffic
lights or at railroad crossings).
EAU16841
Engine break-in There is never a more important period
in the life of your engine than the period
between 0 and 1600 km (1000 mi). For
this reason, you should read the follow-
ing material carefully.
Since the engine is brand new, do not
put an excessive load on it for the first
1600 km (1000 mi). The various parts in
the engine wear and polish themselves
to the correct operating clearances.
During this period, prolonged full-throt-
tle operation or any condition that might
result in engine overheating must be
avoided.
EAU17091
0–1000 km (0–600 mi)
Avoid prolonged operation above 6900
r/min.
1000–1600 km (600–1000 mi)
Avoid prolonged operation above 8300
r/min.
CAUTION:
ECA10301
After 1000 km (600 mi) of operation,
the engine oil must be changed and
the oil filter cartridge or element re-placed.
1600 km (1000 mi) and beyond
The vehicle can now be operated nor-
mally.CAUTION:
ECA10310


Keep the engine speed out of
the tachometer red zone.


If any engine trouble should oc-
cur during the engine break-in
period, immediately have a
Yamaha dealer check the vehi-cle.
U4B1E0E0.book Page 3 Wednesday, October 12, 2005 2:32 PM

PERIODIC MAINTENANCE AND MINOR REPAIR
6-4
6
23 Engine oilChange.
Check oil level and vehicle for oil leakage.√√√√√ √
24Engine oil filter car-
tridgeReplace.√√√
25*Cooling systemCheck coolant level and vehicle for coolant leakage.√√√√ √
Change. Every 3 years
26*Front and rear brake
switchesCheck operation.√√√√√ √
27Moving parts and ca-
blesLubricate.√√√√ √
28*Throttle grip housing
and cableCheck operation and free play.
Adjust the throttle cable free play if necessary.
Lubricate the throttle grip housing and cable.√√√√ √
29*Air induction systemCheck the air cut-off valve, reed valve, and hose for dam-
age.
Replace any damaged parts if necessary.√√√√ √
30*Muffler and exhaust
pipeCheck the screw clamp for looseness.√√√√√
31*EXUP systemCheck operation, cable free play and pulley position.√√√
32*Lights, signals and
switchesCheck operation.
Adjust headlight beam.√√√√√ √ NO. ITEM CHECK OR MAINTENANCE JOBODOMETER READING (× 1000 km)
ANNUAL
CHECK
1 10203040U4B1E0E0.book Page 4 Wednesday, October 12, 2005 2:32 PM