2006 YAMAHA FJR1300AS ignition

TABLE OF CONTENTSSAFETY INFORMATION ..................1-1
DESCRIPTION ..................................2-1
Left view ..........................................2-1
Right view ........................................2-2
Controls and instruments.................2-3
INSTRUMENT AND CONTROL
FUNCTIONS.......................................3-1
YCC-S system ................................3-1
Immobilizer system .........................3-1
Main switch/steering lock ................3-2
Indicator and warning lights ............3-4
Speedometer ..................................3-7
Tachometer ....................................3-7
Multi-function display ......................3-7
Anti-theft alarm (optional) .............3-14
Handlebar switches ......................3-15
Shift pedal .....................................3-17
Hand shift lever .............................3-17
Brake lever ...................................3-18
Brake pedal ..................................3-18
ABS ..............................................3-18
Fuel tank cap ................................3-19
Fuel ...............................................3-20
Fuel tank breather/overflow
hose ..........................................3-21
Catalytic converter ........................3-21
Seats ............................................3-21
Adjusting the rider seat height ......3-23
Storage compartment ...................3-25Accessory box .............................. 3-25
Adjusting the headlight beams ..... 3-26
Handlebar position ....................... 3-26
Opening and closing the
cowlings .................................... 3-27
Rear view mirrors ......................... 3-28
Adjusting the front fork ................. 3-28
Adjusting the shock absorber
assembly ................................... 3-30
Grip warmer adjusting knob ......... 3-31
Sidestand ..................................... 3-32
Ignition circuit cut-off system ........ 3-32
Auxiliary DC jack .......................... 3-34
PRE-OPERATION CHECKS............. 4-1
Pre-operation check list .................. 4-2
OPERATION AND IMPORTANT
RIDING POINTS................................. 5-1
Starting the engine ......................... 5-1
Shifting ........................................... 5-2
Tips for reducing fuel
consumption ............................... 5-3
Engine break-in .............................. 5-3
Parking ........................................... 5-4
PERIODIC MAINTENANCE AND
MINOR REPAIR................................. 6-1
Owner’s tool kit ............................... 6-1
Periodic maintenance and
lubrication chart .......................... 6-2Removing and installing panels ..... 6-5
Checking the spark plugs .............. 6-7
Engine oil and oil filter cartridge ..... 6-8
Final gear oil ................................ 6-10
Coolant ........................................ 6-12
Air filter element ........................... 6-13
Checking the engine idling
speed ........................................ 6-14
Checking the throttle cable
free play .................................... 6-14
Valve clearance ........................... 6-14
Tires ............................................. 6-15
Cast wheels ................................. 6-17
YCC-S clutch ............................... 6-18
Adjusting the rear brake light
switch ....................................... 6-18
Checking the front and rear brake
pads .......................................... 6-18
Checking the brake and
YCC-S clutch fluid levels .......... 6-19
Changing the brake and
YCC-S clutch fluids .................. 6-20
Checking and lubricating the
cables ....................................... 6-21
Checking and lubricating the
throttle grip and cable ............... 6-21
Checking and lubricating the
brake and shift pedals .............. 6-21
Checking and lubricating the
brake lever ................................ 6-22U2D2EAE0.book Page 1 Monday, June 26, 2006 2:55 PM

INSTRUMENT AND CONTROL FUNCTIONS
3-2
3


an immobilizer system indicator
light (See page 3-4.)
The key with the red bow is used to reg-
ister codes in each standard key. Since
re-registering is a difficult process, take
the vehicle along with all three keys to
a Yamaha dealer to have them re-reg-
istered. Do not use the key with the red
bow for driving. It should only be used
for re-registering the standard keys. Al-
ways use a standard key for driving.
CAUTION:
ECA11820


DO NOT LOSE THE CODE RE-
REGISTERING KEY! CONTACT
YOUR DEALER IMMEDIATELY
IF IT IS LOST! If the code re-reg-
istering key is lost, registering
new codes in the standard keys
is impossible. The standard
keys can still be used to start
the vehicle, however if code re-
registering is required (i.e., if a
new standard key is made or all
keys are lost) the entire immobi-
lizer system must be replaced.
Therefore, it is highly recom-mended to use either standard
key and keep the code re-regis-
tering key in a safe place.


Do not submerse any key in wa-
ter.


Do not expose any key to exces-
sively high temperatures.


Do not place any key close to
magnets (this includes, but not
limited to, products such as
speakers, etc.).


Do not place heavy items on any
key.


Do not grind any key or alter its
shape.


Do not disassemble the plastic
part of any key.


Do not put two keys of any im-
mobilizer system on the same
key ring.


Keep the standard keys as well
as keys of other immobilizer
systems away from this vehi-
cle’s code re-registering key.


Keep other immobilizer system
keys away from the main switch
as they may cause signal inter-ference.
EAU10471
Main switch/steering lock The main switch/steering lock controls
the ignition and lighting systems, and is
used to lock the steering.NOTE:Be sure to use the standard key (black
bow) for regular use of the vehicle. To
minimize the risk of losing the code re-
registering key (red bow), keep it in a
safe place and only use it for code re-registering.
U2D2EAE0.book Page 2 Monday, June 26, 2006 2:55 PM

INSTRUMENT AND CONTROL FUNCTIONS
3-32
3
EAU15301
Sidestand The sidestand is located on the left side
of the frame. Raise the sidestand or
lower it with your foot while holding the
vehicle upright.NOTE:The built-in sidestand switch is part of
the ignition circuit cut-off system, which
cuts the ignition in certain situations.
(See further down for an explanation ofthe ignition circuit cut-off system.)
WARNING
EWA10240
The vehicle must not be ridden with
the sidestand down, or if the side-
stand cannot be properly moved up
(or does not stay up), otherwise the
sidestand could contact the ground
and distract the operator, resulting
in a possible loss of control.
Yamaha’s ignition circuit cut-off
system has been designed to assist
the operator in fulfilling the respon-
sibility of raising the sidestand be-
fore starting off. Therefore, check
this system regularly as describedbelow and have a Yamaha dealer re-
pair it if it does not function proper-
ly.
EAU40521
Ignition circuit cut-off system The ignition circuit cut-off system (com-
prising the sidestand switch and brake
light switches) has the following func-
tions.

It prevents starting when the side-
stand is up, but neither brake is ap-
plied.


It prevents starting when either
brake is applied, but the sidestand
is still down.


It cuts the running engine when the
sidestand is moved down.
Periodically check the operation of the
ignition circuit cut-off system according
to the following procedure.WARNING
EWA10260


The vehicle must be placed on
the centerstand during this in-
spection.


If a malfunction is noted, have a
Yamaha dealer check the sys-tem before riding.
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PRE-OPERATION CHECKS
4-3
4
Throttle gripMake sure that operation is smooth.
Check cable free play.
If necessary, have Yamaha dealer adjust cable free play and lubricate cable and
grip housing.6-14, 6-21
Control cablesMake sure that operation is smooth.
Lubricate if necessary.6-21
Wheels and tiresCheck for damage.
Check tire condition and tread depth.
Check air pressure.
Correct if necessary.6-15, 6-17
Brake and shift pedalsMake sure that operation is smooth.
Lubricate pedal pivoting points if necessary.6-21
Brake leverMake sure that operation is smooth.
Lubricate lever pivoting point if necessary.6-22
Centerstand, sidestandMake sure that operation is smooth.
Lubricate pivots if necessary.6-22
Chassis fastenersMake sure that all nuts, bolts and screws are properly tightened.
Tighten if necessary.—
Instruments, lights, signals
and switchesCheck operation.
Correct if necessary.—
Sidestand switchCheck operation of ignition circuit cut-off system.
If system is defective, have Yamaha dealer check vehicle.3-32 ITEM CHECKS PAGE
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OPERATION AND IMPORTANT RIDING POINTS
5-1
5
EAU15950
WARNING
EWA10270


Become thoroughly familiar
with all operating controls and
their functions before riding.
Consult a Yamaha dealer re-
garding any control or function
that you do not thoroughly un-
derstand.


Never start the engine or oper-
ate it in a closed area for any
length of time. Exhaust fumes
are poisonous, and inhaling
them can cause loss of con-
sciousness and death within a
short time. Always make sure
that there is adequate ventila-
tion.


Before starting out, make sure
that the sidestand is up. If the
sidestand is not raised com-
pletely, it could contact the
ground and distract the opera-
tor, resulting in a possible lossof control.
EAU40331
Starting the engine In order for the ignition circuit cut-off
system to enable starting, one of the
following conditions must be met:

The front or rear brake is applied
with the transmission in the neutral
position whether the sidestand is
up or down.


The front or rear brake is applied
with the transmission in gear and
the sidestand is up.WARNING
EWA14540


Before starting the engine,
check the function of the igni-
tion circuit cut-off system ac-
cording to the procedure
described on page 3-32.


Always apply the front or rear
brake while the main switch is in
the “ON” position and the trans-
mission is in gear, otherwise the
rear wheel will move freely.


Never ride with the sidestanddown.
1. Turn the key to “ON” and make
sure that the engine stop switch is
set to “”.
CAUTION:
ECA15510
The following warning lights and in-
dicator light and indicators should
come on for a few seconds, then go
off.

Oil level warning light


Engine trouble/YCC-S indica-
tors and warning light


Immobilizer system indicator
light


ABS warning light
If a warning or indicator light, or an
indicator does not go off, see page
3-4 for the corresponding circuit
check.
2. Shift the transmission into the neu-
tral position with the front or rear
brake applied.NOTE:When the transmission is in the neutral
position, the neutral indicator light
should be on, otherwise have a
Yamaha dealer check the electrical cir-cuit.
3. Start the engine by pushing the
start switch.
U2D2EAE0.book Page 1 Monday, June 26, 2006 2:55 PM

PERIODIC MAINTENANCE AND MINOR REPAIR
6-27
6
If a fuse is blown, replace it as follows.
1. Turn the key to “OFF” and turn off
the electrical circuit in question.
2. Remove the blown fuse, and then
install a new fuse of the specified
amperage.
CAUTION:
ECA10640
Do not use a fuse of a higher amper-
age rating than recommended to
avoid causing extensive damage to
the electrical system and possibly afire.
3. Turn the key to “ON” and turn on
the electrical circuit in question to
check if the device operates.
4. If the fuse immediately blows
again, have a Yamaha dealer
check the electrical system.
1. Fuse box
2. Right radiator fan fuse
3. Left radiator fan fuse
4. Hazard fuse
5. Backup fuse (for odometer, clock and immo-
bilizer system)
6. YCC-S motor control fuse
7. Headlight fuse
8. Signaling system fuse
9. ABS control unit fuse
10.Ignition fuse
11.Fuel injection system fuse
12.Auxiliary DC jack fuse
13.Spare fuse
Specified fuses:
Main fuse:
50.0 A
Headlight fuse:
25.0 A
Signaling system fuse:
15.0 A
Ignition fuse:
10.0 A
Radiator fan fuse:
15.0 A × 2
Backup fuse:
10.0 A
Hazard fuse:
10.0 A
Fuel injection system fuse:
15.0 A
ABS control unit fuse:
10.0 A
Auxiliary DC jack fuse:
3.0 A
ABS motor fuse:
30.0 A
YCC-S motor control fuse:
30.0 A
U2D2EAE0.book Page 27 Monday, June 26, 2006 2:55 PM

PERIODIC MAINTENANCE AND MINOR REPAIR
6-30
6
EAU39020
Auxiliary light bulb If the auxiliary light does not come on,
have a Yamaha dealer check the elec-
trical circuit or replace the bulb.
EAU25870
Troubleshooting Although Yamaha motorcycles receive
a thorough inspection before shipment
from the factory, trouble may occur dur-
ing operation. Any problem in the fuel,
compression, or ignition systems, for
example, can cause poor starting and
loss of power.
The following troubleshooting charts
represent quick and easy procedures
for checking these vital systems your-
self. However, should your motorcycle
require any repair, take it to a Yamaha
dealer, whose skilled technicians have
the necessary tools, experience, and
know-how to service the motorcycle
properly.
Use only genuine Yamaha replace-
ment parts. Imitation parts may look like
Yamaha parts, but they are often inferi-
or, have a shorter service life and can
lead to expensive repair bills.
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PERIODIC MAINTENANCE AND MINOR REPAIR
6-31
6
EAU25911
Troubleshooting charts Starting problems or poor engine performance
WARNING
EWA10840
Keep away open flames and do not smoke while checking or working on the fuel system.
Check the fuel level in
the fuel tank.1. Fuel
There is enough fuel.
There is no fuel.
Check the compression.
Supply fuel.
The engine does not start.
Check the compression.
Operate the electric starter.2. Compression
There is compression.
There is no compression.
Check the ignition.
Have a Yamaha dealer
check the vehicle.
Remove the spark plugs
and check the electrodes.3. Ignition
Wipe off with a dry cloth and correct the
spark plug gaps, or replace the spark plugs.
Have a Yamaha dealer check the vehicle.
The engine does not start.
Have a Yamaha dealer
check the vehicle.
The engine does not start.
Check the battery.
Operate the electric starter.4. Battery
The engine turns over
quickly.
The engine turns over
slowly.
The battery is good.Check the battery lead connections,
and charge the battery if necessary.
DryWet
Open the throttle halfway and operate
the electric starter.
U2D2EAE0.book Page 31 Monday, June 26, 2006 2:55 PM