2006 YAMAHA FJR1300AS engine

TABLE OF CONTENTSSAFETY INFORMATION ..................1-1
DESCRIPTION ..................................2-1
Left view ..........................................2-1
Right view ........................................2-2
Controls and instruments.................2-3
INSTRUMENT AND CONTROL
FUNCTIONS.......................................3-1
YCC-S system ................................3-1
Immobilizer system .........................3-1
Main switch/steering lock ................3-2
Indicator and warning lights ............3-4
Speedometer ..................................3-7
Tachometer ....................................3-7
Multi-function display ......................3-7
Anti-theft alarm (optional) .............3-14
Handlebar switches ......................3-15
Shift pedal .....................................3-17
Hand shift lever .............................3-17
Brake lever ...................................3-18
Brake pedal ..................................3-18
ABS ..............................................3-18
Fuel tank cap ................................3-19
Fuel ...............................................3-20
Fuel tank breather/overflow
hose ..........................................3-21
Catalytic converter ........................3-21
Seats ............................................3-21
Adjusting the rider seat height ......3-23
Storage compartment ...................3-25Accessory box .............................. 3-25
Adjusting the headlight beams ..... 3-26
Handlebar position ....................... 3-26
Opening and closing the
cowlings .................................... 3-27
Rear view mirrors ......................... 3-28
Adjusting the front fork ................. 3-28
Adjusting the shock absorber
assembly ................................... 3-30
Grip warmer adjusting knob ......... 3-31
Sidestand ..................................... 3-32
Ignition circuit cut-off system ........ 3-32
Auxiliary DC jack .......................... 3-34
PRE-OPERATION CHECKS............. 4-1
Pre-operation check list .................. 4-2
OPERATION AND IMPORTANT
RIDING POINTS................................. 5-1
Starting the engine ......................... 5-1
Shifting ........................................... 5-2
Tips for reducing fuel
consumption ............................... 5-3
Engine break-in .............................. 5-3
Parking ........................................... 5-4
PERIODIC MAINTENANCE AND
MINOR REPAIR................................. 6-1
Owner’s tool kit ............................... 6-1
Periodic maintenance and
lubrication chart .......................... 6-2Removing and installing panels ..... 6-5
Checking the spark plugs .............. 6-7
Engine oil and oil filter cartridge ..... 6-8
Final gear oil ................................ 6-10
Coolant ........................................ 6-12
Air filter element ........................... 6-13
Checking the engine idling
speed ........................................ 6-14
Checking the throttle cable
free play .................................... 6-14
Valve clearance ........................... 6-14
Tires ............................................. 6-15
Cast wheels ................................. 6-17
YCC-S clutch ............................... 6-18
Adjusting the rear brake light
switch ....................................... 6-18
Checking the front and rear brake
pads .......................................... 6-18
Checking the brake and
YCC-S clutch fluid levels .......... 6-19
Changing the brake and
YCC-S clutch fluids .................. 6-20
Checking and lubricating the
cables ....................................... 6-21
Checking and lubricating the
throttle grip and cable ............... 6-21
Checking and lubricating the
brake and shift pedals .............. 6-21
Checking and lubricating the
brake lever ................................ 6-22U2D2EAE0.book Page 1 Monday, June 26, 2006 2:55 PM

SAFETY INFORMATION
1-2
1 due to EXCESSIVE SPEED or un-
dercornering (insufficient lean an-
gle for the speed).
Always obey the speed limit and
never travel faster than warrant-
ed by road and traffic conditions.
Always signal before turning or
changing lanes. Make sure that
other motorists can see you.


The posture of the operator and
passenger is important for proper
control.
The operator should keep both
hands on the handlebar and
both feet on the operator foot-
rests during operation to main-
tain control of the motorcycle.
The passenger should always
hold onto the operator, the seat
strap or grab bar, if equipped,
with both hands and keep both
feet on the passenger footrests.
Never carry a passenger unless
he or she can firmly place both
feet on the passenger footrests.


Never ride under the influence of
alcohol or other drugs.


This motorcycle is designed for on-
road use only. It is not suitable for
off-road use.
Protective apparel
The majority of fatalities from motor-
cycle accidents are the result of head
injuries. The use of a safety helmet is
the single most critical factor in the pre-
vention or reduction of head injuries.


Always wear an approved helmet.


Wear a face shield or goggles.
Wind in your unprotected eyes
could contribute to an impairment
of vision that could delay seeing a
hazard.


The use of a jacket, heavy boots,
trousers, gloves, etc., is effective in
preventing or reducing abrasions
or lacerations.


Never wear loose-fitting clothes,
otherwise they could catch on the
control levers, footrests, or wheels
and cause injury or an accident.


Never touch the engine or exhaust
system during or after operation.
They become very hot and cancause burns. Always wear protec-
tive clothing that covers your legs,
ankles, and feet.


A passenger should also observe
the above precautions.
Modifications
Modifications made to this motorcycle
not approved by Yamaha, or the re-
moval of original equipment, may ren-
der the motorcycle unsafe for use and
may cause severe personal injury.
Modifications may also make your
motorcycle illegal to use.
Loading and accessories
Adding accessories or cargo to your
motorcycle can adversely affect stabili-
ty and handling if the weight distribution
of the motorcycle is changed. To avoid
the possibility of an accident, use ex-
treme caution when adding cargo or
accessories to your motorcycle. Use
extra care when riding a motorcycle
that has added cargo or accessories.
Here are some general guidelines to
follow if loading cargo or adding acces-
sories to your motorcycle:
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SAFETY INFORMATION
1-4
1 tor and may limit control ability,
therefore, such accessories are
not recommended.


Use caution when adding electri-
cal accessories. If electrical acces-
sories exceed the capacity of the
motorcycle’s electrical system, an
electric failure could result, which
could cause a dangerous loss of
lights or engine power.
Gasoline and exhaust gas


GASOLINE IS HIGHLY FLAMMA-
BLE:
Always turn the engine off when
refueling.
Take care not to spill any gaso-
line on the engine or exhaust
system when refueling.
Never refuel while smoking or in
the vicinity of an open flame.


Never start the engine or let it run
for any length of time in a closed
area. The exhaust fumes are poi-
sonous and may cause loss of
consciousness and death within a
short time. Always operate your
motorcycle in an area that has ad-
equate ventilation.


Always turn the engine off before
leaving the motorcycle unattended
and remove the key from the main
switch. When parking the motor-
cycle, note the following:
The engine and exhaust system
may be hot, therefore, park the
motorcycle in a place where pe-
destrians or children are not like-
ly to touch these hot areas.
Do not park the motorcycle on a
slope or soft ground, otherwise it
may fall over.
Do not park the motorcycle near
a flammable source, (e.g., a ker-
osene heater, or near an open
flame), otherwise it could catch
fire.


When transporting the motorcycle
in another vehicle, make sure that
it is kept upright. If the motorcycle
should lean over, gasoline may
leak out of the fuel tank.


If you should swallow any gaso-
line, inhale a lot of gasoline vapor,
or allow gasoline to get into your
eyes, see your doctor immediately.
If any gasoline spills on your skinor clothing, immediately wash the
affected area with soap and water
and change your clothes.
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DESCRIPTION
2-1
2
EAU10410
Left view1. Accessory box (page 3-25)
2. Front fork spring preload adjusting bolt (page 3-28)
3. Front fork rebound damping force adjusting knob (page 3-28)
4. Owner’s tool kit (page 6-1)
5. Rider seat (page 3-21)
6. Passenger seat (page 3-21)
7. Final gear oil filler bolt (page 6-10)
8. Final gear oil drain bolt (page 6-10)9. YCC-S clutch fluid reservoir (page 6-19)
10.Shock absorber assembly spring preload adjusting lever (page 3-30)
11.Air filter element (page 6-13)
12.Shift pedal (page 3-17)
13.Engine oil filler cap (page 6-8)
14.Engine oil filter cartridge (page 6-8)
15.Engine oil level check window (page 6-8)U2D2EAE0.book Page 1 Monday, June 26, 2006 2:55 PM

INSTRUMENT AND CONTROL FUNCTIONS
3-1
3
EAU40472
YCC-S system This vehicle features the YCC-S
(Yamaha Chip Controlled-Shift) sys-
tem.
The basic function of this system allows
the rider to shift gears without the use of
a clutch lever. Furthermore, a shift lever
is equipped on the handlebar, allowing
the rider to choose to shift gears either
with the shift pedal or by hand.
When the engine is started and the shift
pedal or the shift lever is moved, a sig-
nal is sent to the MCU (Motor Control
Unit) which disengages the clutch, then
the shift is made. The MCU engages
the clutch once the engine is running at
the proper speed. Clutch engagement
is controlled optimally by the MCU ac-
cording to engine r/min, engine require-
ments, and riding conditions. See
“Handlebar switches” (page 3-15) and
OPERATION AND IMPORTANT
RIDING POINTS (page 5-1) for further
explanation of this system.
NOTE:This is not an automatic transmission,
only the clutch system is automatic.The gears must be shifted by the rider.
EAU10972
Immobilizer system This vehicle is equipped with an immo-
bilizer system to help prevent theft by
re-registering codes in the standard
keys. This system consists of the fol-
lowing.

a code re-registering key (with a
red bow)


two standard keys (with a black
bow) that can be re-registered with
new codes


a transponder (which is installed in
the code re-registering key)


an immobilizer unit


an ECU
1. Code re-registering key (red bow)
2. Standard keys (black bow)
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INSTRUMENT AND CONTROL FUNCTIONS
3-3
3
EAU26811
ON
All electrical circuits are supplied with
power; the meter lighting, taillights, li-
cense plate light and auxiliary lights
come on, and the engine can be start-
ed. The key cannot be removed.NOTE:The headlights come on automatically
when the engine is started and stay onuntil the key is turned to “OFF”.
EAU10660
OFF
All electrical systems are off. The key
can be removed.
EAU10690
LOCK
The steering is locked, and all electrical
systems are off. The key can be re-
moved.To lock the steering
1. Turn the handlebars all the way to
the left or right.
2. Push the key in from the “OFF” po-
sition, and then turn it to “LOCK”
while still pushing it.
3. Remove the key.To unlock the steering
Push the key into the main switch, and
then turn it to “OFF” while still pushing
it.
WARNING
EWA10060
Never turn the key to “OFF” or
“LOCK” while the vehicle is moving,
otherwise the electrical systems will
be switched off, which may result in
loss of control or an accident. Make
sure that the vehicle is stopped be-
fore turning the key to “OFF” or“LOCK”.
1. Push.
2. Turn.
1. Push.
2. Turn.
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INSTRUMENT AND CONTROL FUNCTIONS
3-4
3
EAU39460
(Parking)
The steering is locked, and the tail-
lights, license plate light and auxiliary
lights are on. The hazard lights and turn
signal lights can be turned on, but all
other electrical systems are off. The
key can be removed.
The steering must be locked before the
key can be turned to “”.
CAUTION:
ECA11020
Do not use the parking position for
an extended length of time, other-wise the battery may discharge.
EAU11003
Indicator and warning lights
EAU11030
Turn signal indicator lights “” and
“”
The corresponding indicator light flash-
es when the turn signal switch is
pushed to the left or right.
EAU11060
Neutral indicator light “”
This indicator light comes on when the
transmission is in the neutral position.
EAU11080
High beam indicator light “”
This indicator light comes on when the
high beam of the headlight is switched
on.
EAU11120
Oil level warning light “”
This warning light comes on when the
engine oil level is low.
The electrical circuit of the warning light
can be checked by turning the key to
“ON”.
If the warning light does not come on
for a few seconds, then go off, have a
Yamaha dealer check the electrical cir-
cuit.NOTE:Even if the oil level is sufficient, the
warning light may flicker when riding on
a slope or during sudden acceleration
or deceleration, but this is not a mal-function.
1. Left turn signal indicator light “”
2. Right turn signal indicator light “”
3. Engine trouble “”/YCC-S “” indi-
cators and warning light
4. Anti-lock Brake System (ABS) warning light
“”
5. Neutral indicator light “”
6. High beam indicator light “”
7. Oil level warning light “”
8. Immobilizer system indicator light
SHIFT
ABS
U2D2EAE0.book Page 4 Monday, June 26, 2006 2:55 PM

INSTRUMENT AND CONTROL FUNCTIONS
3-5
3
EAU40512
Engine trouble “”/YCC-S
“” indicators and warning
light
Engine trouble indicator “” andwarning lightThis indicator is displayed and the
warning light comes on or flashes when
an electrical circuit monitoring the en-
gine is defective. When this occurs,
have a Yamaha dealer check the self-
diagnosis system. (See page 3-7 for an
explanation of the self-diagnosis de-
vice.)YCC-S indicator “” and warning
lightThis indicator is displayed and the
warning light comes on if there is a mal-
function in the YCC-S. If this occurs:

YCC-S is disabled, so it will be im-
possible to shift out of the gear you
are in


the clutch may stay engaged, so a
shuddering sensation may be felt
as you come to a stop
Stop the vehicle when it is safe to do so,
and park it away from traffic. Have a
Yamaha dealer check the YCC-S.
NOTE:In order to be able to move the vehicle
after it has stopped, if shifting is impos-
sible using the hand shift lever and shift
pedal, proceed as follows:
Place the vehicle on the centerstand,
then while rotating the rear wheel, push
the shift pedal rod and pivot forward un-
til the transmission is in the neutral po-sition.
The electrical circuit of the indicators
and warning light can be checked by
turning the key to “ON”. If the indicators
and warning light do not come on for a
1. Engine trouble indicator “” and warning
lightSHIFT
1. YCC-S indicator “” and warning light
SHIFTSHIFT
1. Shift pedal rod pivot
2. Shift pedal rod
U2D2EAE0.book Page 5 Monday, June 26, 2006 2:55 PM