2016 YAMAHA YZF-R6 check engine

Table of contentsSafety information ............................ 1-1
Description ....................................... 2-1
Left view ......................................... 2-1
Right view ....................................... 2-2
Controls and instruments ............... 2-3
Instrument an d control functions ... 3-1
Immobilizer system......................... 3-1
Main switch/steering lock............... 3-2
Indicator lights and warning lights............................................ 3-4
Multi-function meter unit ................ 3-8
Handlebar switches ...................... 3-14
Clutch lever .................................. 3-15
Shift pedal .................................... 3-15
Brake lever.................................... 3-16
Brake pedal .................................. 3-16
Fuel tank cap ................................ 3-17
Fuel ............................................... 3-17
Fuel tank breather hose and overflow hose ............................ 3-19
Catalytic converters ..................... 3-19
Seats ............................................ 3-20
Helmet holding cable.................... 3-21
Rear view mirrors.......................... 3-22
Adjusting the front fork ................. 3-22
Adjusting the shock absorber assembly ................................... 3-24
Luggage strap holders ................. 3-27
EXUP system ................................ 3-27 Sidestand ...................................... 3-28
Ignition circuit cut-off system ....... 3-28
For your safety – pre-operation
checks ............................................... 4-1
Operation an d important ri din g
points ................................................. 5-1
Starting the engine .......................... 5-1
Shifting ............................................ 5-2
Tips for reducing fuel consumption ................................ 5-3
Engine break-in ............................... 5-3
Parking ............................................ 5-4
Perio dic maintenance an d
a d justment ........................................ 6-1
Owner’s tool kit ............................... 6-2
Periodic maintenance chart for the emission control system .............. 6-3
General maintenance and lubrication chart ........................... 6-4
Removing and installing cowlings
and panels ................................... 6-8
Checking the spark plugs ............. 6-12
Engine oil and oil filter cartridge.... 6-13
Coolant.......................................... 6-16
Air filter element ............................ 6-19
Checking the engine idling speed ......................................... 6-19 Checking the throttle grip free
play ............................................ 6-20
Valve clearance............................. 6-20
Tires .............................................. 6-20
Cast wheels .................................. 6-23
Adjusting the clutch lever free play ............................................ 6-23
Checking the brake lever free
play ............................................ 6-24
Brake light switches ..................... 6-24
Checking the front and rear brake pads .......................................... 6-25
Checking the brake fluid level ...... 6-25
Changing the brake fluid .............. 6-27
Drive chain slack........................... 6-27
Cleaning and lubricating the drive chain ................................. 6-29
Checking and lubricating the cables ........................................ 6-29
Checking and lubricating the
throttle grip and cable ............... 6-30
Checking and lubricating the brake and shift pedals............... 6-30
Checking and lubricating the brake and clutch levers ............. 6-31
Checking and lubricating the
sidestand................................... 6-31
Lubricating the swingarm pivots......................................... 6-32
Checking the front fork ................. 6-32
Checking the steering................... 6-33U2CXE2E0.book Page 1 Tuesday, June 9, 2015 5:04 PM

Safety information
1-3
1Avoi
d Car bon Monoxi de Poisonin g
All engine exhaust contains carbon
monoxide, a deadly gas. Breathing
carbon monoxide can cause head-
aches, dizziness, drowsiness, nausea,
confusion, and eventually death.
Carbon Monoxide is a colorless, odor-
less, tasteless gas which may be pres-
ent even if you do not see or smell any
engine exhaust. Deadly levels of car-
bon monoxide can collect rapidly and
you can quickly be overcome and un-
able to save yourself. Also, deadly lev-
els of carbon monoxide can linger for
hours or days in enclosed or poorly
ventilated areas. If you experience any
symptoms of carbon monoxide poi-
soning, leave the area immediately, get
fresh air, and SEEK MEDICAL TREAT-
MENT.  Do not run engine indoors. Even if
you try to ventilate engine exhaust
with fans or open windows and
doors, carbon monoxide can rap-
idly reach dangerous levels.
 Do not run engine in poorly venti-
lated or partially enclosed areas
such as barns, garages, or car-
ports. 
Do not run engine outdoors where
engine exhaust can be drawn into
a building through openings such
as windows and doors.
Loa din g
Adding accessories or cargo to your
motorcycle can adversely affect stabil-
ity and handling if the weight distribu-
tion of the motorcycle is changed. To
avoid the possibility of an accident, use
extreme caution when adding cargo or
accessories to your motorcycle. Use
extra care when riding a motorcycle
that has added cargo or accessories.
Here, along with the information about
accessories below, are some general
guidelines to follow if loading cargo to
your motorcycle:
The total weight of the operator, pas-
senger, accessories and cargo must
not exceed the maximum load limit.
Operation of an overloa ded vehicle
coul d cause an acci dent. When loading within this weight limit,
keep the following in mind:
 Cargo and accessory weight
should be kept as low and close to
the motorcycle as possible. Se-
curely pack your heaviest items as
close to the center of the vehicle
as possible and make sure to dis-
tribute the weight as evenly as
possible on both sides of the mo-
torcycle to minimize imbalance or
instability.
 Shifting weights can create a sud-
den imbalance. Make sure that
accessories and cargo are se-
curely attached to the motorcycle
before riding. Check accessory
mounts and cargo restraints fre-
quently.
• Properly adjust the suspension for your load (suspension-ad-
justable models only), and
check the condition and pres-
sure of your tires.
• Never attach any large or heavy items to the handlebar, front
fork, or front fender. These
items, including such cargo as
sleeping bags, duffel bags, or
Maximum loa d:
186 kg (410 lb)
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Safety information
1-5
1operator and may limit control
ability, therefore, such accesso-
ries are not recommended.
 Use caution when adding electri-
cal accessories. If electrical ac-
cessories exceed the capacity of
the motorcycle’s electrical sys-
tem, an electric failure could re-
sult, which could cause a
dangerous loss of lights or engine
power.
Aftermarket Tires an d Rims
The tires and rims that came with your
motorcycle were designed to match
the performance capabilities and to
provide the best combination of han-
dling, braking, and comfort. Other
tires, rims, sizes, and combinations
may not be appropriate. Refer to page
6-20 for tire specifications and more in-
formation on replacing your tires.
Transportin g the Motorcycle
Be sure to observe following instruc-
tions before transporting the motorcy-
cle in another vehicle.  Remove all loose items from the
motorcycle. 
Check that the fuel cock (if
equipped) is in the “OFF” position
and that there are no fuel leaks.
 Point the front wheel straight
ahead on the trailer or in the truck
bed, and choke it in a rail to pre-
vent movement.
 Shift the transmission in gear (for
models with a manual transmis-
sion).
 Secure the motorcycle with tie-
downs or suitable straps that are
attached to solid parts of the mo-
torcycle, such as the frame or up-
per front fork triple clamp (and not,
for example, to rubber-mounted
handlebars or turn signals, or
parts that could break). Choose
the location for the straps carefully
so the straps will not rub against
painted surfaces during transport.
 The suspension should be com-
pressed somewhat by the tie-
downs, if possible, so that the mo-
torcycle will not bounce exces-
sively during transport.
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Instrument and control functions
3-4
3
EAU49398
In dicator lig hts and warning
lig hts
EAU11032
Turn si gnal in dicator li ghts “ ”
an d“”
Each indicator light will flash when its
corresponding turn signal lights are
flashing.
EAU11061
Neutral in dicator li ght “ ”
This indicator light comes on when the
transmission is in the neutral position.
EAU11081
Hi gh beam in dicator li ght “ ”
This indicator light comes on when the
high beam of the headlight is switched
on.
EAU11256
Oil level warnin g lig ht “ ”
This warning light comes on if the en-
gine oil level is low.
The electrical circuit of the warning
light can be checked by turning the key
to “ON”. The warning light should
come on for a few seconds and then
go off.
If the warning light does not come on
initially when the key is turned to “ON”,
or if the warning light remains on after
confirming that the oil level is correct
(see page 6-13), have a Yamaha dealer
check the vehicle.
TIP Even if the oil level is sufficient, the
warning light may flicker when rid-
ing on a slope or during sudden
acceleration or deceleration, but
this is not a malfunction.
 This model is equipped with a self-
diagnosis device for the oil level
detection circuit. If a problem is
detected in the oil level detection
circuit, the oil level warning light
will flash repeatedly. If this occurs,
have a Yamaha dealer check the
vehicle.
EAU11368
Fuel level warning light “ ”
This warning light comes on when the
fuel level drops below approximately
3.5 L (0.92 US gal, 0.77 Imp.gal). When
this occurs, refuel as soon as possible.
The electrical circuit of the warning
light can be checked by turning the key
to “ON”. The warning light should
come on for a few seconds and then
go off.
1. Left turn signal indicator light “ ”
2. Neutral indicator light “ ”
3. High beam indicator light “ ”
4. Right turn signal indicator light “ ”
5. Fuel level warning light “ ”
6. Oil level warning light “ ”
7. Coolant temperature warning light “ ”
8. Shift timing indicator light
9. Engine trouble warning light “ ”
10.Immobilizer system indicator light
km/h
TRIP A
˚C
12 34 5
6
7
8
9
10
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Instrument and control functions
3-5
3 If the warning light does not come on
initially when the key is turned to “ON”,
or if the warning light remains on after
refueling, have a Yamaha dealer check
the vehicle.
TIPThis model is equipped with a self-di-
agnosis device for the fuel level detec-
tion circuit. If a problem is detected in
the fuel level detection circuit, the fuel
level warning light will flash repeatedly.
If this occurs, have a Yamaha dealer
check the vehicle.
EAU1142E
Coolant temperature warnin
g
li g ht “ ”
This warning light comes on if the en-
gine overheats. If this occurs, reduce
the load on the engine immediately. If
message “HI” flashes in the coolant
temperature display, stop the vehicle,
then stop the engine and let the engine
cool.
The electrical circuit of the warning
light can be checked by turning the key
to “ON”. The warning light should
come on for a few seconds, and then
go off. If the warning light does not come on
initially when the key is turned to “ON”,
or if the warning light remains on, have
a Yamaha dealer check the electrical
circuit.
NOTICE
ECA10022
Do not continue to operate the en-
g
ine if it is overheatin g.TIP For radiator-fan-equipped vehi-
cles, the radiator fan(s) automati-
cally switch on or off according to
the coolant temperature in the ra-
diator.
 If the engine overheats, see page
6-46 for further instructions.
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Instrument and control functions
3-7
3
EAU42775
En gine trou ble warnin g lig ht “ ”
This warning light comes on if a prob-
lem is detected in the electrical circuit
monitoring the engine. If this occurs,
have a Yamaha dealer check the self-
diagnosis system. (See page 3-11 for
an explanation of the self-diagnosis
device.)
The electrical circuit of the warning
light can be checked by turning the key
to “ON”. The warning light should
come on for a few seconds, and then
go off.
If the warning light does not come on
initially when the key is turned to “ON”,
or if the warning light remains on, have
a Yamaha dealer check the electrical
circuit.
EAU11575
Shift timin g in dicator li ght
This indicator light can be set to come
on and go off at the desired engine
speeds and is used to inform the rider
when it is time to shift to the next high-
er gear. The electrical circuit of the indicator
light can be checked by turning the key
to “ON”. The indicator light should
come on for a few seconds, and then
go off.
If the indicator light does not come on
initially when the key is turned to “ON”,
or if the indicator light remains on, have
a Yamaha dealer check the electrical
circuit. (See page 3-12 for a detailed
explanation of the function of this indi-
cator light and on how to set it.)
EAU38626
Immo
bilizer system in dicator li ght
When the key is turned to “OFF” and
30 seconds have passed, the indicator
light will start flashing indicating the im-
mobilizer system is enabled. After 24
hours have passed, the indicator light
will stop flashing, however the immobi-
lizer system is still enabled.
The electrical circuit of the indicator
light can be checked by turning the key
to “ON”. The indicator light should
come on for a few seconds, and then
go off. If the indicator light does not come on
initially when the key is turned to “ON”,
or if the indicator light remains on, have
a Yamaha dealer check the electrical
circuit.
The self-diagnosis device also detects
problems in the immobilizer system
circuits. (See page 3-11 for an expla-
nation of the self-diagnosis device.)
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Instrument and control functions
3-11
3
TIP When the air intake temperature is
below –9 °C, “LO” will be dis-
played.
 Even when the air intake tempera-
ture is displayed, the coolant tem-
perature warning light comes on if
the engine overheats.
 When the key is turned to “ON”,
the coolant temperature is auto-
matically displayed, even if the air
intake temperature was displayed
prior to turning the key to “OFF”.
 When the air intake temperature
display is selected, “A” is dis-
played for one second, and then
“A” and the air intake temperature
are displayed.
Self- dia gnosis device
This model is equipped with a self-di-
agnosis device for various electrical
circuits. If a problem is detected in any
of those circuits, the engine trouble
warning light will come on and the dis-
play will indicate an error code. If the
display indicates any error codes, note
the code number and have a Yamaha
dealer check the vehicle.
The self-diagnosis device also detects
problems in the immobilizer system
circuits. If a problem is detected in the
immobilizer system circuits, the immo- bilizer system indicator light will flash
and the display will indicate an error
code.
TIPIf the display indicates error code 52,
this could be caused by transponder
interference. If this error code appears,
try the following:1. Use the code re-registering key to
start the engine.TIPMake sure there are no other immobi-
lizer keys close to the main switch, and
do not keep more than one immobilizer
key on the same key ring! Immobilizer
system keys may cause signal interfer-
ence, which may prevent the engine
from starting.2. If the engine starts, turn it off andtry starting the engine with the
standard keys.
3. If one or both of the standard keys do not start the engine, take the
vehicle, the code re-registering
key and both standard keys to a
Yamaha dealer and have the stan-
dard keys re-registered.
1. Immobilizer system indicator light
2. Engine trouble warning light “ ”
3. Error code display
321
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Instrument and control functions
3-12
3
NOTICE
ECA11591
If the display in dicates an error co-
d e, the vehicle shoul d b e checked as
soon as possi ble in or der to avoi d
en gine damag e.Display bri ghtness and shift timing
in dicator li ght control mo de
This mode cycles through five control
functions, allowing you to make the fol-
lowing settings in the order listed be-
low. 
Display brightness:
This function allows you to adjust
the brightness of the displays and
tachometer.
 Shift timing indicator light activity
function:
This function allows you to set the
indicator light to on, flash, or off.
 Shift timing indicator light activa-
tion:
This function allows you to select
the engine speed at which the in-
dicator light will be activated.
 Shift timing indicator light deacti-
vation:
This function allows you to select
the engine speed at which the in-
dicator light will be deactivated.
 Shift timing indicator light bright-
ness:
This function allows you to adjust
the brightness of the shift timing
indicator light.
TIPThe brightness level display shows the
brightness level setting.
To adjust the brightness of the displaysand tachometer1. Turn the key to “OFF”.
2. Push and hold the “SELECT” but-
ton.
3. Turn the key to “ON”, and then re- lease the “SELECT” button after
five seconds.
4. Push the “RESET” button to select the desired brightness level.
5. Push the “SELECT” button to con- firm the selected brightness level.
The control mode changes to the
shift timing indicator light activity
function.
To set the shift timing indicator light ac-tivity function1. Push the “RESET” button to select one of the following indicator light
activity settings: On - the indicator light will
come on when activated.
(This setting is selected when
the indicator light stays on.)
1. Shift timing indicator light activation range
2. Brightness adjustable displays
3. Brightness level display
4. Shift timing indicator light
km/h
1
2
3
4
2
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