2016 YAMAHA YZ250F ignition

FUEL INJECTION SYSTEM
8-12
EAS1SM9326YAMAHA DIAGNOSTIC TOOL
This model uses the Yamaha diagnostic tool to identify malfunctions.
For information about using the Yamaha diagnostic tool, refer to the operation manual that is included
with the tool.
FEATURES OF THE YAMAHA DIAGNOSTIC TOOL
A diagnosis can be made more quickly than traditional methods with the Yamaha diagnostic tool.
Using this software, ECU and sensor data, as well as fault diagnosis, vehicle maintenance, and any
necessary information can be recorded and displayed on your computer screen through a USB
adapter connected to the computer interface with a communication cable connected to the vehicle’s
ECU.
Data obtained in various functions can be saved as vehicle history, and can be accumulated.
FUNCTIONS OF THE YAMAHA DIAGNOSTIC TOOL
However, the diagnostic tool cannot be used to freely change the basic vehicle functions, such as
adjusting the ignition timing.
CONNECTING THE YAMAHA DIAGNOSTIC TOOL
1. Remove the coupler for connecting setting tool.Yamaha diagnostic tool
90890-03231
Yamaha diagnostic tool (US)
90890-03234
Fault diagnosis mode Fault codes recorded on the ECU are read, and the con-
tents are displayed.
Function diagnostic mode Check the operation of the output value of each sensor
and actuator.
Inspection mode Determine whether each sensor or actuator is functioning
properly.
CO adjustment mode Adjust the concentration of CO admissions during idling.
Monitoring mode Displays a graph of sensor output values for actual oper-
ating conditions.
Logging mode Records and saves the sensor output value in actual driv-
ing conditions.
View log Displays the logging data.
ECU rewrite If necessary, the ECU is rewritten using the ECU rewrite
data provided by Yamaha. Ignition timing adjustment, etc.
cannot be changed from the vehicle’s original state.

FUEL INJECTION SYSTEM
8-23
Fault code 33
SymptomIgnition coil: open or short circuit detected in the primary lead
of the ignition coil.
Fail-safe systemUnable to start engine
Unable to drive vehicle
Diagnostic code No.30
ActuationActuates the ignition coil five times at one-second intervals.
“WARNING” on the Yamaha diagnostic tool blinks five times when-
ever the ignition coil is actuated.
ProcedureCheck that a spark is generated five times.
• Connect an ignition checker.
Or-
derProbable cause of malfunc-
tion and checkMaintenance job Reinstatement method
1 Connection of ignition coil
coupler.
Check the locking condition
of the coupler.
Disconnect the coupler, and
check the pins (for bent or
broken terminals and locking
condition of the pins).Improperly connected 
Connect the coupler secure-
ly, or repair/replace the wire
harness.After starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played  Repair is finished.
Fault code No. is displayed 
Go to next order.
2 Connection of wire harness
ECU coupler.
Check the locking condition
of the coupler.
Disconnect the coupler, and
check the pins (for bent or
broken terminals and locking
condition of the pins).Improperly connected 
Connect the coupler secure-
ly, or repair/replace the wire
harness.After starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played  Repair is finished.
Fault code No. is displayed 
Go to next order.
3 Wire harness continuity. Open or short circuit  Re-
place the wire harness.
Between ignition coil coupler
and ECU coupler.
orange–orangeAfter starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played  Repair is finished.
Fault code No. is displayed 
Go to next order.
4 Mounted condition of ignition
coil.
Check for looseness or
pinching.
Check the mounted condition
for correctness.Improperly mounted ignition
coil  Remount or replace
the ignition coil.After starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played  Repair is finished.
Fault code No. is displayed 
Go to next order.
5 Defective ignition coil (test
the primary coils for continu-
ity).Check the primary resistance
of the ignition coil.
“CHECKING THE IGNITION
COIL” on page 8-41.After starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played  Repair is finished.
Fault code No. is displayed 
Go to next order.

FUEL INJECTION SYSTEM
8-24
TIP
Disconnect the fuel pump coupler when this diagnostic tool is used. 6 Faulty ECU Execute the diagnostic mode.
(Code No. 30)
No spark  Replace the
ECU.
Fault code 39
Symptom Injector: open or short circuit detected.
Fail-safe systemUnable to start engine
Unable to drive vehicle
Diagnostic code No.36
ActuationActuates injector five times at one-second intervals.
“WARNING” on the Yamaha diagnostic tool blinks five times when
the injector is actuated.
ProcedureCheck that injector is actuated five times by listening for the oper-
ating sound.
Or-
derProbable cause of malfunc-
tion and checkMaintenance job Reinstatement method
1 Connection of injector cou-
pler.
Check the locking condition
of the coupler.
Disconnect the coupler, and
check the pins (for bent or
broken terminals and locking
condition of the pins).Improperly connected 
Connect the coupler secure-
ly, or repair/replace the wire
harness.After starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played  Repair is finished.
Fault code No. is displayed 
Go to next order.
2 Defective injector. Check the injector.
“CHECKING THE FUEL IN-
JECTOR” on page 8-47.After starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played  Repair is finished.
Fault code No. is displayed 
Go to next order.
3 Connection of wire harness
ECU coupler.
Check the locking condition
of the coupler.
Disconnect the coupler, and
check the pins (for bent or
broken terminals and locking
condition of the pins).Improperly connected 
Connect the coupler secure-
ly, or repair/replace the wire
harness.After starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played  Repair is finished.
Fault code No. is displayed 
Go to next order. Fault code 33
SymptomIgnition coil: open or short circuit detected in the primary lead
of the ignition coil.

FUEL INJECTION SYSTEM
8-26
Fault code 44
SymptomEEPROM fault code No.: an error is detected while reading or
writing on EEPROM.
Fail-safe systemAble/Unable to start engine
Able/Unable to drive vehicle
Diagnostic code No.60
Diagnostic tool displayDisplays the location of the abnormal portion of the EEPROM data.
• 00: No fault
• 01: CO adjustment valve
• 07: Power Tuner injection correction setting 0–8, or Power Tuner
ignition timing correction setting 0–8
Procedure—
Or-
derProbable cause of malfunc-
tion and checkMaintenance job Reinstatement method
1 Identification of malfunction-
ing point.Execute the diagnostic mode.
(Code No. 60)
00: Perform a checkup in or-
der 4.
01: Perform a checkup in or-
der 2.
07: Perform a checkup in or-
der 3.
2 “01” is indicated in Diagnostic
mode (Code No. 60). EEP-
ROM data error for adjust-
ment of CO concentration.Change the CO concentra-
tion, and rewrite in EEPROM.
After this adjustment, turn
OFF the switch on the FI di-
agnostic tool sub-lead, and
turn it ON again.
Memory not recovered  Re-
place the ECU.Turn “ON” the switch on the
FI diagnostic tool sub-lead.
Fault code No. is not dis-
played  Repair is finished.
Fault code number is dis-
played  Repeat the proce-
dure in order 1. If the same
number is indicated, perform
the procedure in order 3.
3 “07” is indicated in Diagnostic
mode (Code No. 60). EE-
PROM data error for setting
tool adjustment values for
fuel injection amount or igni-
tion timing.Erase the setting map in the
diagnostic mode.
(Code No. 65)Turn “ON” the switch on the
FI diagnostic tool sub-lead.
Fault code No. is not dis-
played  Repair is finished.
Fault code number is dis-
played  Repeat the proce-
dure in order 1. If the same
number is indicated, perform
the procedure in order 4.
4 Faulty ECU Replace the ECU.

ELECTRICAL COMPONENTS
8-41
EAS1SM9334CHECKING THE IGNITION SPARK GAP
1. Check:
• Ignition spark gap
Out of specification  Perform the ignition
system troubleshooting.
Refer to “TROUBLESHOOTING” on page 8-
4.
TIP
If the ignition spark gap is within specification,
the ignition system circuit is operating normally.
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a. Remove the spark plug cap from the spark
plug.
b. Connect the ignition checker “1”.
c. Crank the engine, and measure the ignition
spark gap “a”.
d. Crank the engine, and gradually increase
the spark gap until a misfire occurs.
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EAS1SM9335CHECKING THE SPARK PLUG CAP
1. Remove:
• Spark plug cap
(from the spark plug lead)
2. Check:
• Spark plug cap resistance
Out of specification  Replace.
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a. Connect the pocket tester ( 1k) to the
spark plug cap.
b. Measure the spark plug cap resistance.
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EAS1SM9336CHECKING THE IGNITION COIL
1. Disconnect:
• Ignition coil terminal
(from the sub wire harness)
• Spark plug cap
(from the ignition coil)
2. Check:
• Primary coil resistance
Out of specification  Replace.
▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼
a. Connect the pocket tester ( 1) to the igni-
tion coil. Minimum ignition spark gap
6.0 mm (0.24 in)
Ignition checker
90890-06754
Oppama pet-4000 spark checker
YM-34487
2. Spark plug cap
Resistance
10.00 k
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
Primary coil resistance
2.16–2.64 
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
Ignition coil terminal 1 “1”
• Negative tester probe 
Ignition coil terminal 2 “2”

ELECTRICAL COMPONENTS
8-42
b. Measure the primary coil resistance.
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3. Check:
• Secondary coil resistance
Out of specification  Replace.
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a. Connect the pocket tester ( 1k) to the ig-
nition coil.
b. Measure the secondary coil resistance.
▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲
EAS1SM9337CHECKING THE CRANKSHAFT POSITION
SENSOR
1. Disconnect:
• Crankshaft position sensor coupler
(from the wire harness)
2. Check:
• Crankshaft position sensor resistance
Out of specification  Replace.
▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼
a. Connect the pocket tester ( 100) to the
crankshaft position sensor coupler.
b. Measure the crankshaft position sensor re-
sistance.
▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲
Secondary coil resistance
8.64–12.96 k
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
Ignition coil terminal 1 “1”
• Negative tester probe 
Spark plug lead “2”
Crankshaft position sensor resis-
tance
228–342 
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
Gray “1”
• Negative tester probe 
Black “2”
12
Gy B

ELECTRICAL COMPONENTS
8-43
EAS1SM9338CHECKING THE ECU
1. Check:
• Mounted condition of ECU.
Improperly mounted  Remount.
TIP
• The lean angle sensor is built into the ECU.
• The lean angle sensor stops the engine in
case of a turnover.
• To ensure that the lean angle sensor operates
correctly, do not change the installed condi-
tion of the ECU.
EAS1SM9339CHECKING THE STATOR COIL
1. Disconnect:
• Stator coil coupler
(from the wire harness)
2. Check:
• Stator coil resistance
Out of specification  Replace.
▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼
a. Connect the pocket tester ( 1) to the sta-
tor coil coupler.
b. Measure the stator coil resistance.
▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲
EAS1SM9340CHECKING THE RECTIFIER/REGULATOR
1. Check:
• Rectifier/regulator output voltage
Out of specification  Replace.
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a. Set the digital tachometer to the ignition coil.
b. Connect the pocket tester (20 VDC) to the
rectifier/regulator coupler.
c. Start the engine and let it run at about 5000
r/min.
d. Measure the output voltage.
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Stator coil resistance
0.624–0.936 
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
White “1”
• Negative tester probe 
White “2”
12
No load regulated voltage
14.1–14.9 V
Digital tachometer
90890-06760
YU-39951-B
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
Red “1”
• Negative tester probe 
Black “2”
21
B
WWR

TROUBLESHOOTING
9-1
EAS1SM9348
TROUBLESHOOTING
EAS1SM9349GENERAL INFORMATION
TIP
The following guide for troubleshooting does
not cover all the possible causes of trouble. It
should be helpful, however, as a guide to basic
troubleshooting. Refer to the relative procedure
in this manual for checks, adjustments, and re-
placement of parts.
EAS1SM9350STARTING FAILURES
Engine
1. Cylinder and cylinder head
• Loose spark plug
• Loose cylinder head or cylinder
• Damaged cylinder head gasket
• Damaged cylinder gasket
• Worn or damaged cylinder
• Incorrect valve clearance
• Improperly sealed valve
• Incorrect valve-to-valve-seat contact
• Incorrect valve timing
• Faulty valve spring
• Seized valve
2. Piston and piston ring(s)
• Improperly installed piston ring
• Damaged, worn or fatigued piston ring
• Seized piston ring
• Seized or damaged piston
3. Air filter
• Improperly installed air filter
• Clogged air filter element
4. Crankcase and crankshaft
• Improperly assembled crankcase
• Seized crankshaft
Fuel system
1. Fuel tank
• Empty fuel tank
• Clogged fuel tank breather hose
• Deteriorated or contaminated fuel
• Clogged or damaged fuel hose
2. Fuel pump
• Faulty fuel pump
3. Throttle body
• Deteriorated or contaminated fuel
• Sucked-in airElectrical system
1. Spark plug
• Incorrect spark plug gap
• Incorrect spark plug heat range
• Fouled spark plug
• Worn or damaged electrode
• Worn or damaged insulator
2. Ignition coil
• Cracked or broken ignition coil body
• Broken or shorted primary or secondary
coils
3. Ignition system
• Faulty ECU
• Faulty crankshaft position sensor
• Broken generator rotor woodruff key
4. Switches and wiring
• Faulty ECU
• Faulty engine stop switch
• Broken or shorted wiring
• Faulty neutral switch
• Improperly grounded circuit
• Loose connections
EAS1SM9351INCORRECT ENGINE IDLING SPEED
Engine
1. Cylinder and cylinder head
• Incorrect valve clearance
• Damaged valve train components
2. Air filter
• Clogged air filter element
Fuel system
1. Throttle body
• Damaged or loose throttle body joint
• Improperly synchronized throttle bodies
• Improper throttle cable free play
• Flooded throttle body
Electrical system
1. Spark plug
• Incorrect spark plug gap
• Incorrect spark plug heat range
• Fouled spark plug
• Worn or damaged electrode
• Worn or damaged insulator
• Faulty spark plug cap
2. Ignition coil
• Broken or shorted primary or secondary
coils
• Cracked or broken ignition coil