Page 275 of 360
WATER PUMP
6-4
EAS1SL5299
WATER PUMP
Removing the water pump
Order Part name Q’ty Remarks
CoolantDrain.
Refer to “CHANGING THE COOLANT” on
page 3-8.
Engine oilDrain.
Refer to “CHANGING THE ENGINE OIL” on
page 3-15.
Right crankcase cover Refer to “CLUTCH” on page 5-37.
1 Water pump housing 1
2 Dowel pin 2
3Gasket 1
4Collar 1
5Pin 1
6 Impeller shaft assembly 1
7 Oil seal 1
8 Bearing 1
9 Oil seal 1
For installation, reverse the removal proce-
dure.
LS
LS
7
6
2
2
3
1
854
New
New
New
E
9
New
E
10 Nm (1.0 m kgf, 7.2 ft Ibf)T.R.
10 Nm (1.0 m kgf, 7.2 ft Ibf)T.R.
Page 276 of 360

WATER PUMP
6-5
EAS1SL5300REMOVING THE OIL SEAL
TIP
• Remove the oil seal when the coolant level
changes frequently more than usual, coolant
has discolored, or engine oil has become
milky.
• Do not use the removed oil seal.
1. Remove:
• Oil seals “1”
EAS1SL5301CHECKING THE WATER PUMP
1. Check:
• Water pump housing cover
• Impeller shaft
Cracks/damage/wear Replace.
EAS1SL5302CHECKING THE BEARING
1. Check:
• Bearing
Rotate the inner race with your finger.
Rough spot/seizure Replace.
EAS1SL5303INSTALLING THE OIL SEAL
1. Install:
• Oil seals “1”
TIP
• Apply the lithium soap base grease on the oil
seal lip.
• Install the oil seal with its manufacture’s
marks or numbers facing the right crankcase
cover “2”.2. Install:
• Bearing “1”
TIP
Install the bearing by pressing its outer race
parallel.
EAS1SL5304ASSEMBLING THE WATER PUMP
1. Install:
• Impeller shaft assembly “1”
•Pin “2”
• Collar “3”
• Circlip “4”
TIP
• Take care so that the oil seal lip is not dam-
aged or the spring does not slip off its posi-
tion.
• When installing the impeller shaft, apply the
engine oil to the oil seal lip, the bearing, and
the impeller shaft.
1 1
New
1 1New
New
LS
LS
New
4
1
23New
E
Page 284 of 360
THROTTLE BODY
7-5
EAS1SL5315
THROTTLE BODY
Removing the throttle body
Order Part name Q’ty Remarks
Seat Refer to “GENERAL CHASSIS” on page 4-1.
Side cover (left/right) Refer to “GENERAL CHASSIS” on page 4-1.
Air scoop (left/right) Refer to “GENERAL CHASSIS” on page 4-1.
Fuel tank Refer to “FUEL TANK” on page 7-1.
ECU Refer to “ENGINE REMOVAL” on page 5-1.
Ignition coil Refer to “ENGINE REMOVAL” on page 5-1.
1 Intake air temperature sensor coupler 1 Disconnect.
2 Air filter case 1
3 Fuel injector coupler 1 Disconnect.
4 Intake air pressure sensor coupler 1 Disconnect.
5 Throttle position sensor coupler 1 Disconnect.
6 Throttle cable cover 1
7 Throttle cable 2
8 Fuel hose 1
9 Exhaust pipe bracket 1
2
1
6
10
11
9
8
3
7
5
4
3.5 Nm (0.35 mkgf, 2.5 ftIbf)T.R
.
3.5 Nm (0.35 mkgf, 2.5 ftIbf)T.R
.
7 Nm (0.7 mkgf, 5.1 ftIbf)T.R.
3.0 Nm (0.30 mkgf, 2.2 ftIbf)T.R.
10 Nm (1.0 mkgf, 7.2 ftIbf)T.R.
Page 289 of 360

8
ELECTRICAL SYSTEM
IGNITION SYSTEM.......................................................................................... 8-2
CIRCUIT DIAGRAM ................................................................................... 8-2
TROUBLESHOOTING ............................................................................... 8-4
CHARGING SYSTEM....................................................................................... 8-6
CIRCUIT DIAGRAM ................................................................................... 8-6
TROUBLESHOOTING ............................................................................... 8-8
FUEL INJECTION SYSTEM........................................................................... 8-10
CIRCUIT DIAGRAM ................................................................................. 8-10
YAMAHA DIAGNOSTIC TOOL ................................................................ 8-12
TROUBLESHOOTING DETAILS ............................................................. 8-13
FUEL PUMP SYSTEM.................................................................................... 8-32
CIRCUIT DIAGRAM ................................................................................. 8-32
TROUBLESHOOTING ............................................................................. 8-34
ELECTRICAL COMPONENTS....................................................................... 8-36
CHECKING THE SWITCHES .................................................................. 8-38
CHECKING THE IGNITION SPARK GAP................................................ 8-41
CHECKING THE SPARK PLUG CAP ...................................................... 8-41
CHECKING THE IGNITION COIL ............................................................ 8-41
CHECKING THE CRANKSHAFT POSITION SENSOR........................... 8-42
CHECKING THE ECU .............................................................................. 8-43
CHECKING THE STATOR COIL ............................................................. 8-43
CHECKING THE RECTIFIER/REGULATOR ........................................... 8-43
CHECKING THE COOLANT TEMPERATURE SENSOR........................ 8-44
CHECKING THE THROTTLE POSITION SENSOR ................................ 8-44
CHECKING THE THROTTLE POSITION SENSOR
INPUT VOLTAGE .................................................................................... 8-45
CHECKING THE INTAKE AIR PRESSURE SENSOR ............................ 8-46
CHECKING THE INTAKE AIR TEMPERATURE SENSOR ..................... 8-46
CHECKING THE NEUTRAL SWITCH ..................................................... 8-46
CHECKING THE FUEL INJECTOR ......................................................... 8-47
Page 293 of 360
IGNITION SYSTEM
8-3
1. Crankshaft position sensor
2. AC magneto
3. Rectifier/regulator
4. Joint connector
5. Condenser
7. Engine stop switch
9. ECU
10.Ignition coil
11.Spark plug
Page 294 of 360

IGNITION SYSTEM
8-4
EAS1SL5323TROUBLESHOOTING
The ignition system fails to operate (no spark or intermittent spark).
TIP
Before troubleshooting, remove the following part(s):
1. Side cover (left/right)
2. Seat
3. Fuel tank
4. Air scoop (left/right)
5. Air filter case cover
1. Check the ignition system wire har-
ness connections.NG
Reconnect.
OK
2. Check the spark plug.
Refer to “CHECKING THE SPARK
PLUG” on page 3-35.NG
Correct or replace the spark plug.
OK
3. Check the ignition spark gap.
Refer to “CHECKING THE IGNI-
TION SPARK GAP” on page 8-41.OK
The ignition system circuit is OK.
NG
4. Check the ignition coil.
Refer to “CHECKING THE IGNI-
TION COIL” on page 8-41.NG
Replace the ignition coil.
OK
5. Check the engine stop switch.
Refer to “CHECKING THE
SWITCHES” on page 8-38.NG
Replace the engine stop switch.
OK
6. Check the crankshaft position sen-
sor.
Refer to “CHECKING THE CRANK-
SHAFT POSITION SENSOR” on
page 8-42.NG
Replace the crankshaft position sensor.
OK
7. Check the stator coil.
Refer to “CHECKING THE STA-
TOR COIL” on page 8-43.NG
Replace the stator coil.
OK
Page 298 of 360
CHARGING SYSTEM
8-8
EAS1SL5325TROUBLESHOOTING
The condenser is not being charged.
TIP
Before troubleshooting, remove the following part (s):
1. Seat
2. Air scoop (left)
1. Check the entire charging system’s
wiring.NG
Reconnect.
OK
2. Check the rectifier/regulator.
Refer to “CHECKING THE RECTI-
FIER/REGULATOR” on page 8-43.NG
Replace the rectifier/regulator.
OK
3. Check the stator coil.
Refer to “CHECKING THE STA-
TOR COIL” on page 8-43.NG
Replace the stator coil.
OK
4. Check the charging system wire
harness.
Refer to “CIRCUIT DIAGRAM” on
page 8-6.NG
Repair or replace the wire harness.
OK
Replace the condenser.
Page 313 of 360

FUEL INJECTION SYSTEM
8-23
Fault code 33
SymptomIgnition coil: open or short circuit detected in the primary lead
of the ignition coil.
Fail-safe systemUnable to start engine
Unable to drive vehicle
Diagnostic code No.30
ActuationActuates the ignition coil five times at one-second intervals.
“WARNING” on the Yamaha diagnostic tool blinks five times when-
ever the ignition coil is actuated.
ProcedureCheck that a spark is generated five times.
• Connect an ignition checker.
Or-
derProbable cause of malfunc-
tion and checkMaintenance job Reinstatement method
1 Connection of ignition coil
coupler.
Check the locking condition
of the coupler.
Disconnect the coupler, and
check the pins (for bent or
broken terminals and locking
condition of the pins).Improperly connected
Connect the coupler secure-
ly, or repair/replace the wire
harness.After starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played Repair is finished.
Fault code No. is displayed
Go to next order.
2 Connection of wire harness
ECU coupler.
Check the locking condition
of the coupler.
Disconnect the coupler, and
check the pins (for bent or
broken terminals and locking
condition of the pins).Improperly connected
Connect the coupler secure-
ly, or repair/replace the wire
harness.After starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played Repair is finished.
Fault code No. is displayed
Go to next order.
3 Wire harness continuity. Open or short circuit Re-
place the wire harness.
Between ignition coil coupler
and ECU coupler.
orange–orangeAfter starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played Repair is finished.
Fault code No. is displayed
Go to next order.
4 Mounted condition of ignition
coil.
Check for looseness or
pinching.
Check the mounted condition
for correctness.Improperly mounted ignition
coil Remount or replace
the ignition coil.After starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played Repair is finished.
Fault code No. is displayed
Go to next order.
5 Defective ignition coil (test
the primary coils for continu-
ity).Check the primary resistance
of the ignition coil.
“CHECKING THE IGNITION
COIL” on page 8-41.After starting the engine, idle
this and wait about 5 sec-
onds.
Fault code No. is not dis-
played Repair is finished.
Fault code No. is displayed
Go to next order.