2015 YAMAHA WR 250F check engine

FUEL INJECTION SYSTEM
9-55
TIP
Before troubleshooting, disconnect the starter motor lead from the starter relay.
Fault code No. Er-4
ItemRegistered data cannot be received from the Yamaha diagnos-
tic tool.
Fail-safe systemAble to start engine
Able to drive vehicle
Diagnostic code No.—
Diagnostic tool display—
Procedure—
ItemProbable cause of malfunc-
tion and checkMaintenance jobConfirmation of service
completion
1 Connection of Yamaha diag-
nostic tool coupler.
Check the locking condition
of the coupler.
Disconnect the coupler and
check the pins (bent or bro-
ken terminals and locking
condition of the pins).Improperly connected 
Connect the coupler securely
or repair/replace the wire har-
ness.Push the start switch.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Go to item 2.
2 Connection of wire harness
ECU coupler.
Check the locking condition
of the coupler.
Disconnect the coupler and
check the pins (bent or bro-
ken terminals and locking
condition of the pins).Improperly connected 
Connect the coupler securely
or repair/replace the wire har-
ness.Push the start switch.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Go to item 3.
3 Wire harness continuity. Open or short circuit  Re-
place the wire harness.
light green–light greenPush the start switch.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Go to item 4.
4 Yamaha diagnostic tool mal-
function.Replace the Yamaha diag-
nostic tool.Push the start switch.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Go to item 5.
5 Malfunction in ECU. Replace the ECU.

FUEL PUMP SYSTEM
9-58
EAS2GB2382TROUBLESHOOTING
The fuel pump fails to operate.
TIP
Before troubleshooting, remove the following part(s):
1. Seat
2. Side cover (left/right)
3. Air scoop (left/right)
4. Fuel tank
1. Check the fuse.
Refer to “CHECKING THE FUSES”
on page 9-68.NG 
Replace the fuse(s).
OK 
2. Check the battery.
Refer to “CHECKING AND
CHARGING THE BATTERY” on
page 9-69.NG 
• Clean the battery terminals.
• Recharge or replace the battery.
OK 
3. Check the engine stop switch.
Refer to “CHECKING THE
SWITCHES” on page 9-64.NG 
Replace the engine stop switch.
OK 
4. Check fuel pressure.
Refer to “CHECKING THE FUEL
PRESSURE” on page 8-5.NG 
Replace the fuel pump.
OK 
5. Check the fuel pump system wire
harness connections.
Refer to “CIRCUIT DIAGRAM” on
page 9-56.NG 
Properly connect or repair the fuel pump
system’s wiring.
OK 
Replace the ECU.

ELECTRICAL COMPONENTS
9-70
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5. Charge:
• Battery
(refer to the appropriate charging method)
EWA
WARNING
Do not quick charge a battery.
ECA
NOTICE
• Do not use a high-rate battery charger
since it forces a high-amperage current
into the battery quickly and can cause bat-
tery overheating and battery plate dam-
age.
• If it is impossible to regulate the charging
current on the battery charger, be careful
not to overcharge the battery.• When charging a battery, be sure to re-
move it from the vehicle. (If charging has
to be done with the battery mounted on the
vehicle, disconnect the negative battery
lead from the battery terminal.)
• To reduce the chance of sparks, do not
plug in the battery charger until the battery
charger leads are connected to the bat-
tery.
• Before removing the battery charger lead
clips from the battery terminals, be sure to
turn off the battery charger.
• Make sure the battery charger lead clips
are in full contact with the battery terminal
and that they are not shorted. A corroded
battery charger lead clip may generate
heat in the contact area and a weak clip
spring may cause sparks.
• If the battery becomes hot to the touch at
any time during the charging process, dis-
connect the battery charger and let the
battery cool before reconnecting it. Hot
batteries can explode!
• As shown in the following illustration, the
open-circuit voltage of a VRLA (Valve Reg-
ulated Lead Acid) battery stabilizes about
30 minutes after charging has been com-
pleted. Therefore, wait 30 minutes after
charging is completed before measuring
the open-circuit voltage.
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Charging method using a variable-cur-
rent (voltage) charger
a. Measure the open-circuit voltage prior to
charging.
TIP
Voltage should be measured 30 minutes after
the engine is stopped. Example
Open-circuit voltage = 12.0 V
Charging time = 6.5 hours
Charge of the battery = 20–30%
A. Open-circuit voltage (V)
B. Charging time (hours)
C. Relationship between the open-circuit voltage
and the charging time at 20°C (68°F)
D. These values vary with the temperature, the
condition of the battery plates, and the electro-
lyte level.
A. Open-circuit voltage (V)
B. Charging condition of the battery (%)
C. Ambient temperature 20°C (68°F)
A. Open-circuit voltage (V)
B. Time (minutes)
C. Charging
D. Ambient temperature 20°C (68°F)
E. Check the open-circuit voltage.

ELECTRICAL COMPONENTS
9-71
b. Connect a charger and ammeter to the bat-tery and start charging.
TIP
Set the charging voltage to 16–17 V.If the set-
ting is lower, charging will be insufficient. If too
high, the battery will be over-charged.
c. Make sure that the current is higher than the standard charging current written on the bat-
tery.
TIP
If the current is lower than the standard charg-
ing current written on the battery, set the charg-
ing voltage adjust dial at 20–24 V and monitor
the amperage for 3–5 minutes to check the bat-
tery.
d. Adjust the voltage so that the current is at
the standard charging level.
e. Set the time according to the charging time suitable for the open-circuit voltage.
f. If charging requires more than 5 hours, it is advisable to check the charging current after
a lapse of 5 hours. If there is any change in
the amperage, readjust the voltage to obtain
the standard charging current.
g. Measure the battery open-circuit voltage af-
ter leaving the battery unused for more than
30 minutes.
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Charging method using a constant volt-
age charger
a. Measure the open-circuit voltage prior to charging.
TIP
Voltage should be measured 30 minutes after
the engine is stopped.
b. Connect a charger and ammeter to the bat-tery and start charging.
c. Make sure that the current is higher than the
standard charging current written on the bat-
tery.
TIP
If the current is lower than the standard charg-
ing current written on the battery, this type of
battery charger cannot charge the VRLA (Valve
Regulated Lead Acid) battery. A variable volt-
age charger is recommended.
d. Charge the battery until the battery’s charg-ing voltage is 15 V.
TIP
Set the charging time at 20 hours (maximum).
e. Measure the battery open-circuit voltage af-ter leaving the battery unused for more than
30 minutes.
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6. Install:
• Battery terminals
7. Connect:
• Battery leads(to the battery terminals)
ECA
NOTICE
First, connect the positive battery lead “1”,
and then the negative battery lead “2”.
8. Check:• Battery terminalsDirt  Clean with a wire brush.
Loose connection  Connect properly.
9. Lubricate: • Battery band
10.Install: • Seat
• Side cover (left/right)
Refer to “GENERAL CHASSIS” on page 5-
1.
• Standard charging current is reached
Battery is good.
• Standard charging current is not reached Replace the battery.
12.8 V or more --- Charging is complete.
12.7 V or less --- Recharging is required.
Under 12.0 V --- Replace the battery.
12.8 V or more --- Charging is complete.
12.7 V or less --- Recharging is required.
Under 12.0 V --- Replace the battery.
Recommended lubricantDielectric grease
2
1

ELECTRICAL COMPONENTS
9-73
EAS2GB2389CHECKING THE DIODE
1. Check:
•Diode
Out of specification  Replace.
TIP
The pocket tester and the analog pocket tester
readings are shown in the following table.
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a. Disconnect the diode from the wire harness.
b. Connect the pocket tester ( 1) to the di-
ode coupler as shown.
c. Check the diode for continuity.
d. Check the diode for no continuity.
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EAS2GB2390CHECKING THE IGNITION SPARK GAP
1. Check:
• Ignition spark gap
Out of specification  Perform the ignition
system troubleshooting, starting with step 4.
Refer to “TROUBLESHOOTING” on page 9-
4.
TIP
If the ignition spark gap is within specification,
the ignition system circuit is operating normally.
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a. Remove the spark plug cap from the spark
plug.
b. Connect the ignition checker “1” as shown.
c. Push the engine stop switch.
d. Measure the ignition spark gap “a”.
e. Crank the engine by pushing the start switch
and gradually increase the spark gap until a
misfire occurs.
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EAS2GB2391CHECKING THE SPARK PLUG CAP
1. Remove:
• Spark plug cap
(from the spark plug lead)
2. Check:
• Spark plug cap resistance
Out of specification  Replace. Result
Continuity
(between “3” to “4”)
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
No continuity
Tester positive lead  Sky blue
“1”
Tester negative lead  Green/
Black “2”
Continuity
Tester positive lead  Green/
Black “2”
Tester negative lead  Sky blue
“1”
No continuity
Tester positive lead  Red “3”
Tester negative lead  Red/Blue
“4”
Continuity
Tester positive lead  Red/Blue
“4”
Tester negative lead  Red “3”
2
1
4
3
R Sb
G/B R/L
Minimum ignition spark gap
6.0 mm (0.24 in)
Ignition checker
90890-06754
Oppama pet–4000 spark checker
YM-34487
2. Spark plug cap
Spark plug cap resistance
10 k

ELECTRICAL COMPONENTS
9-76
b. Check the starter motor operation.
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EAS28150CHECKING THE STATOR COIL
1. Disconnect:
• Stator coil coupler
(from the wire harness)
2. Check:
• Stator coil resistance
Out of specification  Replace the stator
coil.
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a. Connect the pocket tester ( 1) to the sta-
tor coil coupler as shown.b. Measure the stator coil resistance.
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EAS2GB2396CHECKING THE RECTIFIER/REGULATOR
1. Check:
• Charging voltage
Out of specification  Replace the rectifier/
regulator.
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a. Set the digital tachometer to the ignition coil.
b. Connect the pocket tester (DC 20 V) to the
rectifier/regulator coupler as shown.
c. Start the engine and let it run at approxi-
mately 5000 r/min.
d. Measure the charging voltage.
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Stator coil resistance
0.528–0.792  (W–W)
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
White “1”
• Negative tester probe 
White “2”
• Positive tester probe 
White “1”
• Negative tester probe 
White “3”
• Positive tester probe 
White “2”
• Negative tester probe 
White “3”
Charging voltage
14 V at 5000 r/min
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
Red “1”
• Negative tester probe 
Black “2”
123
12

ELECTRICAL COMPONENTS
9-80
c. Start the engine.
d. Measure the throttle position sensor input
voltage.
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EAS2GB2404CHECKING THE INTAKE AIR PRESSURE
SENSOR
1. Check:
• Intake air pressure sensor output voltage
Out of specification  Replace.
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a. Connect the pocket tester (20 VDC) to the
intake air pressure sensor coupler (wire har-
ness side).b. Start the engine.
c. Measure the intake air pressure sensor out-
put voltage.
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EAS2GB2405CHECKING THE INTAKE AIR TEMPERA-
TURE SENSOR
1. Remove:
• Intake air temperature sensor
(from the air filter case)
EWA
WARNING
• Handle the intake air temperature sensor
with special care.
• Never subject the intake air temperature
sensor to strong shocks. If the intake air
temperature sensor is dropped, replace it.
2. Check:
• Intake air temperature sensor resistance
Out of specification  Replace.
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a. Connect the pocket tester ( 1k/100) to
the intake air temperature sensor terminal. • Positive tester probe 
Blue “1”
• Negative tester probe 
Black/Blue “2”
Intake air pressure sensor output
voltage
3.61–3.67 V at 101.3 kPa (3.61–
3.67 V at 1.01kgf/cm
2, 3.61–3.67
V at 14.7 psi)
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
Pink “1”
• Negative tester probe 
Black/Blue “2”
21
Intake air temperature sensor re-
sistance
290–390  at 80 °C (290–390 
176 °F)
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
Brown/White “1”
• Negative tester probe 
Black/Blue “2”
12

TROUBLESHOOTING
10-1
EAS2GB2407
TROUBLESHOOTING
EAS2GB2408GENERAL INFORMATION
TIP
The following guide for troubleshooting does
not cover all the possible causes of trouble. It
should be helpful, however, as a guide to basic
troubleshooting. Refer to the relative procedure
in this manual for checks, adjustments, and re-
placement of parts.
EAS2GB2409STARTING FAILURES
Engine
1. Cylinder and cylinder head
• Loose spark plug
• Loose cylinder head or cylinder
• Damaged cylinder head gasket
• Damaged cylinder gasket
• Worn or damaged cylinder
• Incorrect valve clearance
• Improperly sealed valve
• Incorrect valve-to-valve-seat contact
• Incorrect valve timing
• Faulty valve spring
• Seized valve
2. Piston and piston ring(s)
• Improperly installed piston ring
• Damaged, worn or fatigued piston ring
• Seized piston ring
• Seized or damaged piston
3. Air filter
• Improperly installed air filter
• Clogged air filter element
4. Crankcase and crankshaft
• Improperly assembled crankcase
• Seized crankshaft
Fuel system
1. Fuel tank
• Empty fuel tank
• Clogged fuel tank breather hose
• Deteriorated or contaminated fuel
• Clogged or damaged fuel hose
2. Fuel pump
• Faulty fuel pump
3. Throttle body
• Deteriorated or contaminated fuel
• Sucked-in air
Electrical system
1. Spark plug
• Incorrect spark plug gap• Incorrect spark plug heat range
• Fouled spark plug
• Worn or damaged electrode
• Worn or damaged insulator
2. Ignition coil
• Cracked or broken ignition coil body
• Broken or shorted primary or secondary
coils
3. Ignition system
• Faulty ECU
• Faulty crankshaft position sensor
• Broken generator rotor woodruff key
4. Switches and wiring
• Faulty ECU
• Faulty engine stop switch
• Broken or shorted wiring
• Faulty neutral switch
• Improperly grounded circuit
• Loose connections
EAS2GB2410INCORRECT ENGINE IDLING SPEED
Engine
1. Cylinder and cylinder head
• Incorrect valve clearance
• Damaged valve train components
2. Air filter
• Clogged air filter element
Fuel system
1. Throttle body
• Damaged or loose throttle body joint
• Improperly synchronized throttle bodies
• Improper throttle cable free play
• Flooded throttle body
Electrical system
1. Spark plug
• Incorrect spark plug gap
• Incorrect spark plug heat range
• Fouled spark plug
• Worn or damaged electrode
• Worn or damaged insulator
• Faulty spark plug cap
2. Ignition coil
• Broken or shorted primary or secondary
coils
• Cracked or broken ignition coil
3. Ignition system
• Faulty ECU
• Faulty crankshaft position sensor
• Broken generator rotor woodruff key