2013 YAMAHA YZ250F ECU

FOREWORD
INTRODUCTION
Congratulations on your purchase of
a Yamaha YZ series. This model is
the culmination of Yamaha's vast ex-
perience in the production of paceset-
ting racing machines. It represents
the highest grade of craftsmanship
and reliability that have made Yama-
ha a leader.
This manual explains operation, in-
spection, basic maintenance and tun-
ing of your machine. If you have any
questions about this manual or your
machine, please contact your Yama-
ha dealer.
Yamaha continually seeks advance-
ments in product design and quality.
Therefore, while this manual contains
the most current product information
available at the time of printing, there
may be minor discrepancies between
your machine and this manual. If you
have any questions concerning this
manual, please consult your Yamaha
dealer.
PLEASE READ THIS MANUAL
CAREFULLY AND COMPLETELY
BEFORE OPERATING THIS MA-
CHINE. DO NOT ATTEMPT TO OP-
ERATE THIS MACHINE UNTIL YOU
HAVE ATTAINED A SATISFACTO-
RY KNOWLEDGE OF ITS CON-
TROLS AND OPERATING
FEATURES AND UNTIL YOU HAVE
BEEN TRAINED IN SAFE AND
PROPER RIDING TECHNIQUES.
REGULAR INSPECTIONS AND
CAREFUL MAINTENANCE,
ALONG WITH GOOD RIDING
SKILLS, WILL ENSURE THAT YOU
SAFETY ENJOY THE CAPABILI-
TIES AND THE RELIABILITY OF
THIS MACHINE.
IMPORTANT MANUAL
INFORMATION
Particularly important information is
distinguished in this manual by the
following notations.
This is the safety alert symbol. It is
used to alert you to potential per-
sonal injury hazards. Obey all safe-
ty messages that follow this
symbol to avoid possible injury or
death. A WARNING indicates a hazardous
situation which, if not avoided,
could result in death or serious in-
jury.
A NOTICE indicates special pre-
cautions that must be taken to
avoid damage to the vehicle or oth-
er property.
A TIP provides key information to
make procedures easier or clearer.
SAFETY INFORMATION
THIS MACHINE IS DESIGNED
STRICTLY FOR COMPETITION
USE, ONLY ON A CLOSED
COURSE. It is illegal for this machine
to be operated on any public street,
road, or highway. Off-road use on
public lands may also be illegal.
Please check local regulations before
riding.
• THIS MACHINE IS TO BE OPER-
ATED BY AN EXPERIENCED RID-
ER ONLY.
Do not attempt to operate this ma-
chine at maximum power until you
are totally familiar with its character-
istics.
• THIS MACHINE IS DESIGNED TO
BE RIDDEN BY THE OPERATOR
ONLY.
Do not carry passengers on this
machine.
• ALWAYS WEAR PROTECTIVE
APPAREL.
When operating this machine, al-
ways wear an approved helmet with
goggles or a face shield. Also wear
heavy boots, gloves, and protective
clothing. Always wear proper fitting
clothing that will not be caught in
any of the moving parts or controls
of the machine.
• ALWAYS MAINTAIN YOUR MA-
CHINE IN PROPER WORKING
ORDER.
For safety and reliability, the ma-
chine must be properly maintained.
Always perform the pre-operation
checks indicated in this manual.
Correcting a mechanical problem
before you ride may prevent an ac-
cident.• GASOLINE IS HIGHLY FLAMMA-
BLE.
Always turn off the engine while re-
fueling. Take care to not spill any
gasoline on the engine or exhaust
system. Never refuel in the vicinity
of an open flame, or while smoking.
• GASOLINE CAN CAUSE INJURY.
If you should swallow some gaso-
line, inhale excess gasoline vapors,
or allow any gasoline to get into
your eyes, contact a doctor immedi-
ately. If any gasoline spills onto
your skin or clothing, immediately
wash skin areas with soap and wa-
ter, and change your clothes.
• ONLY OPERATE THE MACHINE
IN AN AREA WITH ADEQUATE
VENTILATION.
Never start the engine or let it run
for any length of time in an enclosed
area. Exhaust fumes are poison-
ous. These fumes contain carbon
monoxide, which by itself is odor-
less and colorless. Carbon monox-
ide is a dangerous gas which can
cause unconsciousness or can be
lethal.
• PARK THE MACHINE CAREFUL-
LY; TURN OFF THE ENGINE.
Always turn off the engine if you are
going to leave the machine. Do not
park the machine on a slope or soft
ground as it may fall over.
• THE ENGINE, EXHAUST PIPE,
MUFFLER, AND OIL TANK WILL
BE VERY HOT AFTER THE EN-
GINE HAS BEEN RUN.
Be careful not to touch them or to
allow any clothing item to contact
them during inspection or repair.
• PROPERLY SECURE THE MA-
CHINE BEFORE TRANSPORTING
IT.
When transporting the machine in
another vehicle, always be sure it is
properly secured and in an upright
position and that the fuel cock is in
the "OFF" position. Otherwise, fuel
may leak out of the carburetor or
fuel tank.

1-10
SPECIAL TOOLS
Timing light
YM-33277-A, 90890-03141 This tool is necessary for checking
ignition timing.
Valve spring compressor
YM-04019, 90890-04019 This tool is needed to remove and
install the valve assemblies.
Clutch holding tool
YM-91042, 90890-04086This tool is used to hold the clutch
when removing or installing the
clutch boss securing nut.
Valve guide remover
Intake 4.0 mm (0.16 in)
Exhaust 4.5 mm (0.18 in)
YM-4111, 90890-04111
YM-4116, 90890-04116This tool is needed to remove and
install the valve guide.
Valve guide installer
Intake 4.0 mm (0.16 in)
Exhaust 4.5 mm (0.18 in)
YM-4112, 90890-04112
YM-4117, 90890-04117This tool is needed to install the
valve guide.
Valve guide reamer
Intake 4.0 mm (0.16 in)
Exhaust 4.5 mm (0.18 in)
YM-4113, 90890-04113
YM-4118, 90890-04118This tool is needed to rebore the
new valve guide. Tool name/Part number How to use Illustration

1-16
CLEANING AND STORAGE
CLEANING AND STORAGE
CLEANING
Frequent cleaning of your machine
will enhance its appearance, maintain
good overall performance, and ex-
tend the life of many components.
1. Before washing the machine,
block off the end of the exhaust
pipe to prevent water from enter-
ing. A plastic bag secured with a
rubber band may be used for this
purpose.
2. If the engine is excessively
greasy, apply some degreaser to
it with a paint brush. Do not apply
degreaser to the chain, sprockets,
or wheel axles.
3. Rinse the dirt and degreaser off
with a garden hose; use only
enough pressure to do the job.
Do not use high-pressure washers
or steam-jet cleaners since they
cause water seepage and deterio-
ration seals.
4. After the majority of the dirt has
been hosed off, wash all surfaces
with warm water and a mild deter-
gent. Use an old toothbrush to
clean hard-to-reach places.
5. Rinse the machine off immediate-
ly with clean water, and dry all
surfaces with a soft towel or cloth.
6. Immediately after washing, re-
move excess water from the
chain with a paper towel and lubri-
cate the chain to prevent rust.
7. Clean the seat with a vinyl uphol-
stery cleaner to keep the cover
pliable and glossy.
8. Automotive wax may be applied
to all painted or chromed surfac-
es. Avoid combination cleaner-
waxes, as they may contain abra-
sives.
9. After completing the above, start
the engine and allow it to idle for
several minutes.STORAGE
If your machine is to be stored for 60
days or more, some preventive mea-
sures must be taken to avoid deterio-
ration. After cleaning the machine
thoroughly, prepare it for storage as
follows:
1. Drain the fuel tank, fuel lines, and
the carburetor float bowl.
2. Remove the spark plug, pour a ta-
blespoon of SAE 10W-40 motor
oil in the spark plug hole, and re-
install the plug. With the engine
stop switch pushed in, kick the en-
gine over several times to coat the
cylinder walls with oil.
3. Remove the drive chain, clean it
thoroughly with solvent, and lubri-
cate it. Reinstall the chain or store
it in a plastic bag tied to the frame.
4. Lubricate all control cables.
5. Block the frame up to raise the
wheels off the ground.
6. Tie a plastic bag over the exhaust
pipe outlet to prevent moisture
from entering.
7. If the machine is to be stored in a
humid or salt-air environment,
coat all exposed metal surfaces
with a film of light oil. Do not apply
oil to rubber parts or the seat cov-
er.
Make any necessary repairs before
the machine is stored.

3-21
CHASSIS
A tight spoke will emit a clear, ringing
tone; a loose spoke will sound flat.
2. Tighten:
• Spokes
(with a spoke nipple wrench "1")
Be sure to retighten these spokes be-
fore and after break-in.
CHECKING THE WHEELS
1. Inspect:
• Wheel runout
Elevate the wheel and turn it.
Abnormal runout→ Replace.2. Inspect:
• Bearing free play
Exist play→Replace.
CHECKING AND ADJUSTING THE
STEERING HEAD
1. Place a stand under the engine to
raise the front wheel off the
ground. WARNING! Securely
support the vehicle so that
there is no danger of it falling
over.
2. Check:
• Steering stem
Grasp the bottom of the forks and
gently rock the fork assembly
back and forth.
Free play→Adjust steering head.
3. Check:
• Steering smooth action
Turn the handlebar lock to lock.
Unsmooth action→Adjust steer-
ing ring nut.
4. Adjust:
• Steering ring nut
Steering ring nut adjustment
steps:
a. Remove the number plate.
b. Remove the handlebar and upper
bracket.c. Loosen the steering ring nut "1"
using the steering nut wrench "2".
d. Tighten the steering ring nut "3"
using steering nut wrench "4".
• Apply the lithium soap base grease
on the thread of the steering stem.
• Set the torque wrench to the steer-
ing nut wrench so that they form a
right angle.
e. Loosen the steering ring nut one
turn.
f. Retighten the steering ring nut us-
ing the steering nut wrench.
Avoid over-tightening.
g. Check the steering stem by turn-
ing it lock to lock. If there is any
binding, remove the steering stem
assembly and inspect the steer-
ing bearings. Spoke nipple wrench:
YM-01521/90890-01521
Spokes:
3 Nm (0.3 m•kg, 2.2
ft•lb)
Steering nut wrench:
YU-33975/90890-01403
Steering nut wrench:
YU-33975/90890-01403
Steering ring nut (initial
tightening):
38 Nm (3.8 m•kg, 27
ft•lb)
Steering ring nut (final
tightening):
7 Nm (0.7 m•kg, 5.1
ft•lb)

4-26
VALVES AND VALVE SPRINGS
h. Press the valve through the valve guide and onto the valve seat to
make a clear pattern.
i. Measure the valve seat width again. If the valve seat width is out
of specification, reface and relap
the valve seat.
CHECKING THE VALVE SPRINGS
1. Measure:• Valve spring free length "a"Out of specification →Replace.
2. Measure: • Compressed spring force "a"Out of specification →Replace.
b. Installed length
3. Measure: • Spring tilt "a"Out of specification →Replace. CHECKING THE
VALVE LIFTERS
1. Inspect:
• Valve lifterScratches/damage →Replace
both lifters and cylinder head.
INSTALLING THE VALVES
1. Apply: • Molybdenum disulfide oil
Onto the valve stem and valve
stem seal.
2. Install:
• Valve "1"
• Valve spring seat "2"
• Valve stem seal "3"
• Valve spring "4"
• Valve spring retainer "5"To cylinder head.
• Make sure that each valve is in-
stalled in its original place, also re-
ferring to the painted color as
follows.
Intake (middle) "a": Sky blue
Intake (right/left) "b": not paint
Exhaust "c": Purple
• Install the valve springs with the larger pitch "d" facing upward.
e. Smaller pitch
3. Install: • Valve cotter
Install the valve cotters by compress-
ing the valve spring with the valve
spring compressor “1” and the valve
spring compressor attachment “2”.
4. To secure the valve cotters onto
the valve stem, lightly tap the
valve tip with a piece of wood.
Hitting the valve tip with excessive
force could damage the valve.
5. Install:• Adjusting pad "1"
• Valve lifter "2"
• Apply the molybdenum disulfide oil on the valve stem end.
• Apply the engine oil on the valve lift- ers.
• Valve lifter must turn smoothly when rotated with a finger.
• Be careful to reinstall valve lifters and pads in their original place.
Free length (valve
spring): Intake:39.76 mm (1.57 in)
: 38.76 mm
(1.53 in)
Exhaust: 37.78 mm (1.49 in)
: 36.78 mm
(1.45 in)
Compressed spring
force: Intake:99–114 N at 28.98 mm
(9.9–11.4 kg at 28.98
mm, 22.27–25.57 lb at
1.14 in)
Exhaust: 126–145 N at 28.30
mm (12.6–14.5 kg at
28.30 mm, 28.44–
31.97 lb at 1.11 in)
Spring tilt limit: Intake:2.5°/1.7 mm (0.067 in)
Exhaust: 2.5°/1.6 mm (0.063 in)
Valve spring compres-
sor:
YM-04019/90890-04019
Valve spring compressor
adapter 19.5 mm: YM-04114
Valve spring compressor
attachment: 900890-04114

4-55
ENGINE REMOVAL
HANDLING NOTE
Support the machine securely so
there is no danger of it falling over.
REMOVING THE DRIVE
SPROCKET
1. Remove:
• Nut (drive sprocket) "1"
• Lock washer "2"
• Straighten the lock washer tab.
• Loosen the nut while applying the
rear brake.
2. Remove:
• Drive sprocket "1"
• Drive chain "2"
Remove the drive sprocket together
with the drive chain.
REMOVING THE ENGINE
1. Remove:
• Pivot shaft "1"
If the pivot shaft is pulled all the way
out, the swingarm will come loose. If
possible, insert a shaft of similar di-
ameter into the other side of the
swingarm to support it.
2. Remove:
• Engine "1"
From right side.
Make sure that the couplers, hoses
and cables are disconnected.
INSTALLING THE ENGINE
1. Install:
• Engine "1"
Install the engine from right side.
• Pivot shaft "2"
• Engine mounting bolt (lower) "3"
• Front engine bracket "4"
• Bolt (front engine bracket) "5"
• Patch "6"
• Engine mounting bolt (front) "7"
• Upper engine bracket "8"
• Bolt (upper engine bracket) "9"
• Engine mounting bolt (upper) "10"• Lower engine guard "11"
• Bolt (lower engine guard) "12"
• Apply the molybdenum disulfide
grease on the pivot shaft.
• Install the patch with the claw "a"
facing outside the chassis.
INSTALLING THE BRAKE PEDAL
1. Install:
• Spring "1"
• Brake pedal "2"
• O-ring "3"
• Bolt (brake pedal) "4"
• Clip "5"
Apply the lithium soap base grease
on the bolt, O-rings and brake pedal
bracket.
Pivot shaft:
85 Nm (8.5 m•kg, 61
ft•lb)
Engine mounting bolt
(lower):
53Nm (5.3 m•kg, 38
ft•lb)
Bolt (front engine brack-
et):
34 Nm (3.4 m•kg, 24
ft•lb)
Engine mounting bolt
(front):
53 Nm (5.3 m•kg, 38
ft•lb)
Bolt (upper engine brack-
et):
34 Nm (3.4 m•kg, 24
ft•lb)
Engine mounting bolt
(upper):
55 Nm (5.5 m•kg, 40
ft•lb)
Bolt (lower engine
guard):
10 Nm (1.0 m•kg, 7.2
ft•lb)
Bolt (brake pedal):
26 Nm (2.6 m•kg, 19
ft•lb)
M

5-3
FRONT WHEEL AND REAR WHEEL
HANDLING NOTE
Support the machine securely so
there is no danger of it falling over.
REMOVING THE REAR WHEEL
1. Remove:
• Wheel "1"
Push the wheel forward and remove
the drive chain "2".
REMOVING THE WHEEL BEARING
1. Remove:
• Bearing "1"
Remove the bearing using a general
bearing puller "2".
CHECKING THE WHEEL
1. Measure:
• Wheel runout
Out of limit → Repair/replace.
2. Inspect:
• Bearing
Rotate inner race with a finger.
Rough spot/seizure → Replace.
Replace the bearings, oil seal and
wheel collar as a set.
CHECKING THE WHEEL AXLE
1. Measure:
• Wheel axle bends
Out of specification → Replace.
Use the dial gauge "1".
The bending value is shown by one
half of the dial gauge reading.
Do not attempt to straighten a bent
axle.
CHECKING THE BRAKE DISC
1. Measure:
• Brake disc deflection (only rear
brake disc)
Use the dial gauge "1".
Out of specification → Inspect
wheel runout.
If wheel runout is in good condi-
tion, replace the brake disc.
2. Measure:
• Brake disc thickness "a"
Out of limit → Replace.INSTALLING THE FRONT WHEEL
1. Install:
• Bearing (left) "1"
• Spacer "2"
• Bearing (right) "3"
• Oil seal "4"
• Apply the lithium soap base grease
on the bearing and oil seal lip when
installing.
• Use a socket that matches the out-
side diameter of the race of the
bearing.
• Left side of bearing shall be in-
stalled first.
• Install the oil seal with its manufac-
ture's marks or numbers facing out-
ward.
Do not strike the inner race of the
bearing. Contact should be made
only with the outer race.
Wheel runout limit:
Radial "1": 2.0 mm
(0.08 in)
Lateral "2": 2.0 mm
(0.08 in)
Wheel axle bending limit:
0.5 mm (0.020 in)
Brake disc deflection lim-
it:
Rear:
: 0.15 mm
(0.006 in)
Brake disc thickness:
Front:
3.0 mm (0.12 in)
: 2.5 mm (0.10
in)
Rear:
4.0 mm (0.16 in)
: 3.5 mm (0.14
in)

5-10
FRONT BRAKE AND REAR BRAKE
HANDLING NOTE
Support the machine securely so
there is no danger of it falling over.
DRAINING THE BRAKE FLUID
1. Remove:
• Brake master cylinder cap "1"
• Protector (rear brake)
Do not remove the diaphragm.
A. Front
B. Rear
2. Connect the transparent hose "2"
to the bleed screw "1" and place a
suitable container under its end.
A. Front
B. Rear
3. Loosen the bleed screw and drain
the brake fluid while pulling the le-
ver in or pushing down on the
pedal.
• Do not reuse the drained brake
fluid.
• Brake fluid may erode painted
surfaces or plastic parts. Always
clean up spilled fluid immediate-
ly.
REMOVING THE BRAKE CALIPER
PISTON
1. Remove:
• Brake caliper piston
Use compressed air and proceed
carefully.
• Cover piston with rag and use ex-
treme caution when expelling
piston from cylinder.
• Never attempt to pry out piston.
Caliper piston removal steps:
a. Insert a piece of rag into the brake
caliper to lock one brake caliper.
b. Carefully force the piston out of
the brake caliper cylinder with
compressed air.
A. Front
B. Rear
REMOVING THE BRAKE CALIPER
PISTON SEAL KIT
1. Remove:
• Brake caliper piston dust seal "1"
• Brake caliper piston seal "2"
Remove the brake caliper piston
seals and brake caliper piston dust
seals by pushing them with a finger.
Never attempt to pry out brake cal-
iper piston seals and brake caliper
piston dust seals.
Replace the brake caliper piston
seals and brake caliper piston dust
seals whenever a caliper is disas-
sembled.
A. Front
B. Rear
CHECKING THE BRAKE MASTER
CYLINDER
1. Inspect:
• Brake master cylinder inner sur-
face "a"
Wear/scratches → Replace mas-
ter cylinder assembly.
Stains→Clean.
Use only new brake fluid.
A. Front
B. Rear
2. Inspect:
• Diaphragm "1"
Crack/damage→Replace.
A. Front
B. Rear