2006 YAMAHA FJR1300AS check engine

TABLE OF CONTENTSSAFETY INFORMATION ..................1-1
DESCRIPTION ..................................2-1
Left view ..........................................2-1
Right view ........................................2-2
Controls and instruments.................2-3
INSTRUMENT AND CONTROL
FUNCTIONS.......................................3-1
YCC-S system ................................3-1
Immobilizer system .........................3-1
Main switch/steering lock ................3-2
Indicator and warning lights ............3-4
Speedometer ..................................3-7
Tachometer ....................................3-7
Multi-function display ......................3-7
Anti-theft alarm (optional) .............3-14
Handlebar switches ......................3-15
Shift pedal .....................................3-17
Hand shift lever .............................3-17
Brake lever ...................................3-18
Brake pedal ..................................3-18
ABS ..............................................3-18
Fuel tank cap ................................3-19
Fuel ...............................................3-20
Fuel tank breather/overflow
hose ..........................................3-21
Catalytic converter ........................3-21
Seats ............................................3-21
Adjusting the rider seat height ......3-23
Storage compartment ...................3-25Accessory box .............................. 3-25
Adjusting the headlight beams ..... 3-26
Handlebar position ....................... 3-26
Opening and closing the
cowlings .................................... 3-27
Rear view mirrors ......................... 3-28
Adjusting the front fork ................. 3-28
Adjusting the shock absorber
assembly ................................... 3-30
Grip warmer adjusting knob ......... 3-31
Sidestand ..................................... 3-32
Ignition circuit cut-off system ........ 3-32
Auxiliary DC jack .......................... 3-34
PRE-OPERATION CHECKS............. 4-1
Pre-operation check list .................. 4-2
OPERATION AND IMPORTANT
RIDING POINTS................................. 5-1
Starting the engine ......................... 5-1
Shifting ........................................... 5-2
Tips for reducing fuel
consumption ............................... 5-3
Engine break-in .............................. 5-3
Parking ........................................... 5-4
PERIODIC MAINTENANCE AND
MINOR REPAIR................................. 6-1
Owner’s tool kit ............................... 6-1
Periodic maintenance and
lubrication chart .......................... 6-2Removing and installing panels ..... 6-5
Checking the spark plugs .............. 6-7
Engine oil and oil filter cartridge ..... 6-8
Final gear oil ................................ 6-10
Coolant ........................................ 6-12
Air filter element ........................... 6-13
Checking the engine idling
speed ........................................ 6-14
Checking the throttle cable
free play .................................... 6-14
Valve clearance ........................... 6-14
Tires ............................................. 6-15
Cast wheels ................................. 6-17
YCC-S clutch ............................... 6-18
Adjusting the rear brake light
switch ....................................... 6-18
Checking the front and rear brake
pads .......................................... 6-18
Checking the brake and
YCC-S clutch fluid levels .......... 6-19
Changing the brake and
YCC-S clutch fluids .................. 6-20
Checking and lubricating the
cables ....................................... 6-21
Checking and lubricating the
throttle grip and cable ............... 6-21
Checking and lubricating the
brake and shift pedals .............. 6-21
Checking and lubricating the
brake lever ................................ 6-22U2D2EAE0.book Page 1 Monday, June 26, 2006 2:55 PM

DESCRIPTION
2-1
2
EAU10410
Left view1. Accessory box (page 3-25)
2. Front fork spring preload adjusting bolt (page 3-28)
3. Front fork rebound damping force adjusting knob (page 3-28)
4. Owner’s tool kit (page 6-1)
5. Rider seat (page 3-21)
6. Passenger seat (page 3-21)
7. Final gear oil filler bolt (page 6-10)
8. Final gear oil drain bolt (page 6-10)9. YCC-S clutch fluid reservoir (page 6-19)
10.Shock absorber assembly spring preload adjusting lever (page 3-30)
11.Air filter element (page 6-13)
12.Shift pedal (page 3-17)
13.Engine oil filler cap (page 6-8)
14.Engine oil filter cartridge (page 6-8)
15.Engine oil level check window (page 6-8)U2D2EAE0.book Page 1 Monday, June 26, 2006 2:55 PM

INSTRUMENT AND CONTROL FUNCTIONS
3-4
3
EAU39460
(Parking)
The steering is locked, and the tail-
lights, license plate light and auxiliary
lights are on. The hazard lights and turn
signal lights can be turned on, but all
other electrical systems are off. The
key can be removed.
The steering must be locked before the
key can be turned to “”.
CAUTION:
ECA11020
Do not use the parking position for
an extended length of time, other-wise the battery may discharge.
EAU11003
Indicator and warning lights
EAU11030
Turn signal indicator lights “” and
“”
The corresponding indicator light flash-
es when the turn signal switch is
pushed to the left or right.
EAU11060
Neutral indicator light “”
This indicator light comes on when the
transmission is in the neutral position.
EAU11080
High beam indicator light “”
This indicator light comes on when the
high beam of the headlight is switched
on.
EAU11120
Oil level warning light “”
This warning light comes on when the
engine oil level is low.
The electrical circuit of the warning light
can be checked by turning the key to
“ON”.
If the warning light does not come on
for a few seconds, then go off, have a
Yamaha dealer check the electrical cir-
cuit.NOTE:Even if the oil level is sufficient, the
warning light may flicker when riding on
a slope or during sudden acceleration
or deceleration, but this is not a mal-function.
1. Left turn signal indicator light “”
2. Right turn signal indicator light “”
3. Engine trouble “”/YCC-S “” indi-
cators and warning light
4. Anti-lock Brake System (ABS) warning light
“”
5. Neutral indicator light “”
6. High beam indicator light “”
7. Oil level warning light “”
8. Immobilizer system indicator light
SHIFT
ABS
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INSTRUMENT AND CONTROL FUNCTIONS
3-5
3
EAU40512
Engine trouble “”/YCC-S
“” indicators and warning
light
Engine trouble indicator “” andwarning lightThis indicator is displayed and the
warning light comes on or flashes when
an electrical circuit monitoring the en-
gine is defective. When this occurs,
have a Yamaha dealer check the self-
diagnosis system. (See page 3-7 for an
explanation of the self-diagnosis de-
vice.)YCC-S indicator “” and warning
lightThis indicator is displayed and the
warning light comes on if there is a mal-
function in the YCC-S. If this occurs:

YCC-S is disabled, so it will be im-
possible to shift out of the gear you
are in


the clutch may stay engaged, so a
shuddering sensation may be felt
as you come to a stop
Stop the vehicle when it is safe to do so,
and park it away from traffic. Have a
Yamaha dealer check the YCC-S.
NOTE:In order to be able to move the vehicle
after it has stopped, if shifting is impos-
sible using the hand shift lever and shift
pedal, proceed as follows:
Place the vehicle on the centerstand,
then while rotating the rear wheel, push
the shift pedal rod and pivot forward un-
til the transmission is in the neutral po-sition.
The electrical circuit of the indicators
and warning light can be checked by
turning the key to “ON”. If the indicators
and warning light do not come on for a
1. Engine trouble indicator “” and warning
lightSHIFT
1. YCC-S indicator “” and warning light
SHIFTSHIFT
1. Shift pedal rod pivot
2. Shift pedal rod
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INSTRUMENT AND CONTROL FUNCTIONS
3-9
3 Clock
To set the clock:
1. Push the “SELECT” button and
“RESET” button together for at
least two seconds.
2. When the hour digits start flashing,
push the “RESET” button to set the
hours.
3. Push the “SELECT” button, and
the minute digits will start flashing.
4. Push the “RESET” button to set
the minutes.
5. Push the “SELECT” button and
then release it to start the clock.Fuel meter
The fuel meter indicates the amount of
fuel in the fuel tank. The display seg-
ments of the fuel meter disappear to-
wards “E” (Empty) as the fuel level
decreases. When the last segment
starts flashing, refuel as soon as possi-
ble. When the key is turned to “ON”, all
of the display segments of the fuel
meter will appear one after the other
and then disappear in order to test the
electrical circuit.
NOTE:This fuel meter is equipped with a self-
diagnosis system. If the electrical circuit
is defective, all the display segmentswill start flashing. If this occurs, have a
Yamaha dealer check the electrical cir-
cuit.
Coolant temperature meter
With the key in the “ON” position, the
coolant temperature meter indicates
the temperature of the coolant. When
the key is turned to “ON”, all of the dis-
play segments of the coolant tempera-
ture meter will appear one after the
other and then disappear in order to
test the electrical circuit. The coolant
temperature varies with changes in the
weather and engine load. If the top seg-
ment flashes, stop the vehicle and let
the engine cool. (See page 6-31.)
1. Clock
2.“SELECT” button
3.“RESET” button
1. Fuel meter
1. Coolant temperature meter
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INSTRUMENT AND CONTROL FUNCTIONS
3-13
3 Average fuel consumption mode
This display shows the average fuel
consumption since it was last reset.
When the average fuel consumption
mode is selected, the display flashes
for five seconds, and then “AV _ _._
MPG” (average distance that can be
traveled using 1.0 Imp.gal of fuel) is dis-
played.NOTE:

To reset the average fuel con-
sumption display, push the “RE-
SET” button to select the mode
again, and then push the “RESET”
button for 1 second while the dis-
play is flashing.


After resetting the average fuel
consumption display, “_ _._” will
be shown for that display until thevehicle has traveled 1 km (0.6 mi).
CAUTION:
ECA15472
If there is a malfunction, “– –.–” will
be displayed. Have a Yamaha dealercheck the vehicle.
Self-diagnosis device
This model is equipped with a self-diag-
nosis device for various electrical cir-
cuits.If any of those circuits are defective, the
multi-function display will indicate a
two-digit error code (e.g., 11, 12, 13).
If the multi-function display indicates
such an error code, note the code num-
ber, and then have a Yamaha dealer
check the vehicle.
CAUTION:
ECA11790
If the multi-function display indi-
cates an error code, the vehicle
should be checked as soon as pos-
sible in order to avoid engine dam-age.
This model is also equipped with a self-
diagnosis device for the immobilizer
system.
If any of the immobilizer system circuits
are defective, the immobilizer system
indicator light will flash, and then the
multi-function display will indicate a
two-digit error code (e.g., 51, 52, 53)
when the key is turned to “ON”.
1. Average fuel consumption
1. Error code display
2. Immobilizer system indicator light
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INSTRUMENT AND CONTROL FUNCTIONS
3-14
3
NOTE:If the multi-function display indicates er-
ror code 52, this could be caused by
transponder interference. If this errorappears, try the following.
1. Use the code re-registering key to
start the engine.NOTE:Make sure there are no other immobi-
lizer keys close to the main switch, and
do not keep more than one immobilizer
key on the same key ring! Immobilizer
system keys may cause signal interfer-
ence, which may prevent the enginefrom starting.
2. If the engine starts, turn it off, and
try starting the engine with the
standard keys.
3. If one or both of the standard keys
do not start the engine, take the
vehicle, the code re-registering
key and both standard keys to a
Yamaha dealer and have the stan-
dard keys re-registered.If the multi-function display indicates
any error codes, note the code number,
and then have a Yamaha dealer check
the vehicle.
EAU12331
Anti-theft alarm (optional) This model can be equipped with an
optional anti-theft alarm by a Yamaha
dealer. Contact a Yamaha dealer for
more information.
U2D2EAE0.book Page 14 Monday, June 26, 2006 2:55 PM

INSTRUMENT AND CONTROL FUNCTIONS
3-21
3
EAU39450
Fuel tank breather/overflow
hose Before operating the motorcycle:

Check the fuel tank breather/over-
flow hose connection.


Check the fuel tank breather/over-
flow hose for cracks or damage,
and replace it if damaged.


Make sure that the end of the fuel
tank breather/overflow hose is not
blocked, and clean it if necessary.
EAU13441
Catalytic converter This vehicle is equipped with catalytic
converters in the exhaust system.
WARNING
EWA10860
The exhaust system is hot after op-
eration. Make sure that the exhaust
system has cooled down before do-ing any maintenance work.CAUTION:
ECA10700
The following precautions must be
observed to prevent a fire hazard or
other damages.

Use only unleaded gasoline.
The use of leaded gasoline will
cause unrepairable damage to
the catalytic converter.


Never park the vehicle near pos-
sible fire hazards such as grass
or other materials that easily
burn.


Do not allow the engine to idletoo long.
EAU39491
Seats Passenger seat
To remove the passenger seat1. Insert the key into the seat lock,
and then turn it counterclockwise.
2. Lift the front of the passenger seat
and pull it forward.
To install the passenger seat1. Insert the projections on the rear of
the passenger seat into the seat
holders as shown, and then push
the front of the seat down to lock it
in place.
1. Fuel tank breather/overflow hose
1. Passenger seat lock
2. Unlock.
U2D2EAE0.book Page 21 Monday, June 26, 2006 2:55 PM