2006 YAMAHA FJR1300A Clean

IMPORTANT MANUAL INFORMATION
EAU10151
Particularly important information is distinguished in this manual by the following notations:NOTE:

This manual should be considered a permanent part of this motorcycle and should remain with it even if the motorcycle
is subsequently sold.


Yamaha continually seeks advancements in product design and quality. Therefore, while this manual contains the most
current product information available at the time of printing, there may be minor discrepancies between your motorcycleand this manual. If you have any questions concerning this manual, please consult your Yamaha dealer.WARNING
EWA10030
PLEASE READ THIS MANUAL CAREFULLY AND COMPLETELY BEFORE OPERATING THIS MOTORCYCLE.
*Product and specifications are subject to change without notice.The Safety Alert Symbol means ATTENTION! BECOME ALERT! YOUR SAFETY IS
INVOLVED!
Failure to follow WARNING instructions could result in severe injury or death
to the
motorcycle operator, a bystander, or a person inspecting or repairing the motor-
cycle.
A CAUTION indicates special precautions that must be taken to avoid damage to
the motorcycle.
A NOTE provides key information to make procedures easier or clearer.
WARNING
CAUTION:
NOTE:
U3P6E0E0.book Page 1 Tuesday, January 24, 2006 10:46 AM

TABLE OF CONTENTSSAFETY INFORMATION ..................1-1
DESCRIPTION ..................................2-1
Left view ..........................................2-1
Right view ........................................2-2
Controls and instruments.................2-3
INSTRUMENT AND CONTROL
FUNCTIONS.......................................3-1
Immobilizer system .........................3-1
Main switch/steering lock ................3-2
Indicator and warning lights ............3-3
Speedometer ..................................3-5
Tachometer ....................................3-5
Multi-function display ......................3-6
Anti-theft alarm (optional) .............3-13
Handlebar switches ......................3-13
Clutch lever ...................................3-15
Shift pedal .....................................3-15
Brake lever ...................................3-16
Brake pedal ..................................3-16
ABS ..............................................3-16
Fuel tank cap ................................3-17
Fuel ...............................................3-18
Fuel tank breather/overflow
hose ..........................................3-19
Catalytic converter ........................3-19
Seats ............................................3-19
Adjusting the rider seat height ......3-21
Storage compartments .................3-23
Accessory box ..............................3-24Adjusting the headlight beams ..... 3-24
Handlebar position ....................... 3-25
Opening and closing the
cowlings .................................... 3-25
Rear view mirrors ......................... 3-26
Adjusting the front fork ................. 3-26
Adjusting the shock absorber
assembly ................................... 3-28
Locks for the optional sidecases
and travel trunk ......................... 3-29
Sidestand ..................................... 3-30
Ignition circuit cut-off system ........ 3-30
Auxiliary DC jack .......................... 3-32
PRE-OPERATION CHECKS............. 4-1
Pre-operation check list .................. 4-2
OPERATION AND IMPORTANT
RIDING POINTS................................. 5-1
Starting the engine ......................... 5-1
Shifting ........................................... 5-2
Tips for reducing fuel
consumption ............................... 5-3
Engine break-in .............................. 5-3
Parking ........................................... 5-4
PERIODIC MAINTENANCE AND
MINOR REPAIR................................. 6-1
Owner’s tool kit ............................... 6-1
Periodic maintenance and
lubrication chart .......................... 6-2Removing and installing panels ..... 6-5
Checking the spark plugs .............. 6-8
Engine oil and oil filter cartridge ..... 6-9
Final gear oil ................................ 6-12
Coolant ........................................ 6-13
Cleaning the air filter element ...... 6-15
Checking the engine idling
speed ........................................ 6-16
Checking the throttle cable free
play ........................................... 6-17
Valve clearance ........................... 6-17
Tires ............................................. 6-17
Cast wheels ................................. 6-20
Clutch lever .................................. 6-20
Adjusting the rear brake light
switch ....................................... 6-21
Checking the front and rear brake
pads .......................................... 6-21
Checking the brake and clutch
fluid levels ................................. 6-22
Changing the brake and clutch
fluids ......................................... 6-23
Checking and lubricating the
cables ....................................... 6-23
Checking and lubricating the
throttle grip and cable ............... 6-24
Checking and lubricating the
brake and shift pedals .............. 6-24
Checking and lubricating the
brake and clutch levers ............ 6-25U3P6E0E0.book Page 1 Tuesday, January 24, 2006 10:46 AM

INSTRUMENT AND CONTROL FUNCTIONS
3-18
3
EAU13220
Fuel Make sure that there is sufficient fuel in
the tank. When refueling, be sure to in-
sert the pump nozzle into the fuel tank
filler hole and to fill the tank to the bot-
tom of the filler tube as shown.
WARNING
EWA10880


Do not overfill the fuel tank, oth-
erwise it may overflow when the
fuel warms up and expands.


Avoid spilling fuel on the hot en-gine.
CAUTION:
ECA10070
Immediately wipe off spilled fuel
with a clean, dry, soft cloth, since
fuel may deteriorate painted surfac-es or plastic parts.
EAU13320
CAUTION:
ECA11400
Use only unleaded gasoline. The use
of leaded gasoline will cause severe
damage to internal engine parts,
such as the valves and piston rings,as well as to the exhaust system.
Your Yamaha engine has been de-
signed to use regular unleaded gaso-
line with a research octane number of
91 or higher. If knocking (or pinging) oc-
curs, use a gasoline of a different brandor premium unleaded fuel. Use of un-
leaded fuel will extend spark plug life
and reduce maintenance costs.
1. Fuel tank filler tube
2. Fuel level
Recommended fuel:
REGULAR UNLEADED GASOLINE
ONLY
Fuel tank capacity:
25.0 L (6.61 US gal) (5.50 Imp.gal)
Fuel reserve amount:
5.5 L (1.45 US gal) (1.21 Imp.gal)
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INSTRUMENT AND CONTROL FUNCTIONS
3-19
3
EAU39450
Fuel tank breather/overflow
hose Before operating the motorcycle:

Check the fuel tank breather/over-
flow hose connection.


Check the fuel tank breather/over-
flow hose for cracks or damage,
and replace it if damaged.


Make sure that the end of the fuel
tank breather/overflow hose is not
blocked, and clean it if necessary.
EAU13441
Catalytic converter This vehicle is equipped with catalytic
converters in the exhaust system.
WARNING
EWA10860
The exhaust system is hot after op-
eration. Make sure that the exhaust
system has cooled down before do-ing any maintenance work.CAUTION:
ECA10700
The following precautions must be
observed to prevent a fire hazard or
other damages.

Use only unleaded gasoline.
The use of leaded gasoline will
cause unrepairable damage to
the catalytic converter.


Never park the vehicle near pos-
sible fire hazards such as grass
or other materials that easily
burn.


Do not allow the engine to idletoo long.
EAU39491
Seats Passenger seat
To remove the passenger seat1. Insert the key into the seat lock,
and then turn it counterclockwise.
2. Lift the front of the passenger seat
and pull it forward.
To install the passenger seat1. Insert the projections on the rear of
the passenger seat into the seat
holders as shown, and then push
the front of the seat down to lock it
in place.
1. Fuel tank breather/overflow hose
1. Passenger seat lock
2. Unlock.
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PERIODIC MAINTENANCE AND MINOR REPAIR
6-2
6
EAU17705
Periodic maintenance and lubrication chart NOTE:

The annual checks must be performed every year, except if a kilometer-based maintenance is performed in-
stead.


From 50000 km, repeat the maintenance intervals starting from 10000 km.


Items marked with an asterisk should be performed by a Yamaha dealer as they require special tools, data and technicalskills.
NO. ITEM CHECK OR MAINTENANCE JOBODOMETER READING (× 1000 km)
ANNUAL
CHECK
1 10203040
1*Fuel lineCheck fuel hoses for cracks or damage.√√√√ √
2*Spark plugsCheck condition.
Clean and regap.√√
Replace.√√
3*ValvesCheck valve clearance.
Adjust.Every 40000 km
4 Air filter elementClean.√√
Replace.√√
5*ClutchCheck operation, fluid level and vehicle for fluid leakage.√√√√√
6*Front brakeCheck operation, fluid level and vehicle for fluid leakage.√√√√√ √
Replace brake pads. Whenever worn to the limit
7*Rear brakeCheck operation, fluid level and vehicle for fluid leakage.√√√√√ √
Replace brake pads. Whenever worn to the limit
8*Brake hosesCheck for cracks or damage.√√√√ √
Replace. Every 4 years
U3P6E0E0.book Page 2 Tuesday, January 24, 2006 10:46 AM

PERIODIC MAINTENANCE AND MINOR REPAIR
6-9
6Before installing a spark plug, the spark
plug gap should be measured with a
wire thickness gauge and, if necessary,
adjusted to specification.
Clean the surface of the spark plug
gasket and its mating surface, and then
wipe off any grime from the spark plug
threads.
NOTE:
If a torque wrench is not available when
installing a spark plug, a good estimate
of the correct torque is 1/4–1/2 turn
past finger tight. However, the spark
plug should be tightened to the speci-fied torque as soon as possible.
EAU19881
Engine oil and oil filter
cartridge The engine oil level should be checked
before each ride. In addition, the oil
must be changed and the oil filter car-
tridge replaced at the intervals speci-
fied in the periodic maintenance and
lubrication chart.
To check the engine oil level
1. Place the vehicle on the center-
stand.NOTE:
Make sure that the vehicle is positioned
straight up when checking the oil level.
A slight tilt to the side can result in afalse reading.
2. Start the engine, warm it up for
several minutes, and then turn it
off.
3. Wait a few minutes until the oil set-
tles, and then check the oil level
through the check window located
at the bottom-left side of the crank-
case.
Specified spark plug:
NGK/CR8E
DENSO/U24ESR-N1. Spark plug gapSpark plug gap:
0.7–0.8 mm (0.028–0.031 in)
Tightening torque:
Spark plug:
12.5 Nm (1.25 m·kgf, 9.0 ft·lbf)
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PERIODIC MAINTENANCE AND MINOR REPAIR
6-15
6
EAU33030
Changing the coolant
WARNING
EWA10380
Never attempt to remove the radiatorcap when the engine is hot.
The coolant must be changed at the in-
tervals specified in the periodic mainte-
nance and lubrication chart. Have a
Yamaha dealer change the coolant.
EAU20471
Cleaning the air filter element The air filter element should be cleaned
at the intervals specified in the periodic
maintenance and lubrication chart.
Clean the air filter element more fre-
quently if you are riding in unusually
wet or dusty areas.
1. Remove panel E. (See page 6-5.)
2. Remove the intake air shroud by
removing the screw and the quick
fastener screws.
3. Remove the air filter case cover by
removing the screws.4. Pull the air filter element out.
5. Lightly tap the air filter element to
remove most of the dust and dirt,
and then blow the remaining dirt1. Intake air shroud
2. Screw
3. Quick fastener screw
1. Air filter case cover
2. Screw
1. Air filter element
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PERIODIC MAINTENANCE AND MINOR REPAIR
6-23
6significantly lower the boiling point
of the fluid and may result in vapor
lock.


Brake fluid may deteriorate paint-
ed surfaces or plastic parts. Al-
ways clean up spilled fluid
immediately.


As the brake pads wear, it is nor-
mal for the brake fluid level to grad-
ually go down. However, if the
brake fluid level goes down sud-
denly, have a Yamaha dealer
check the cause.
EAU22750
Changing the brake and
clutch fluids Have a Yamaha dealer change the
brake and clutch fluids at the intervals
specified in the NOTE after the periodic
maintenance and lubrication chart. In
addition, have the oil seals of the brake
and clutch master cylinders and cali-
pers as well as the brake and clutch
hoses replaced at the intervals listed
below or whenever they are damaged
or leaking.

Oil seals: Replace every two
years.


Brake and clutch hoses: Replace
every four years.
EAU23100
Checking and lubricating the
cables The operation of all control cables and
the condition of the cables should be
checked before each ride, and the ca-
bles and cable ends should be lubricat-
ed if necessary. If a cable is damaged
or does not move smoothly, have a
Yamaha dealer check or replace it.
WARNING
EWA10720
Damage to the outer sheath may in-
terfere with proper cable operation
and will cause the inner cable to
rust. Replace a damaged cable as
soon as possible to prevent unsafeconditions.Recommended lubricant:
Engine oil
U3P6E0E0.book Page 23 Tuesday, January 24, 2006 10:46 AM